From 43216fe018aac686c977149ebacd45d9a03e5471 Mon Sep 17 00:00:00 2001
From: Vincent Janvid <69356202+Vince-janv@users.noreply.github.com>
Date: Tue, 7 Jan 2025 08:36:51 +0100
Subject: [PATCH] fix(NFAnalysis) Prevent variable being overriden
 (#4049)(patch)

### Fixed

- renamed NFAnalysisAPI.config to NFAnalysisAPI.workflow_config_path
---
 cg/meta/workflow/nf_analysis.py | 4 ++--
 cg/meta/workflow/raredisease.py | 2 +-
 cg/meta/workflow/rnafusion.py   | 2 +-
 cg/meta/workflow/tomte.py       | 2 +-
 4 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/cg/meta/workflow/nf_analysis.py b/cg/meta/workflow/nf_analysis.py
index 7677b8397e..0b0d985444 100644
--- a/cg/meta/workflow/nf_analysis.py
+++ b/cg/meta/workflow/nf_analysis.py
@@ -63,7 +63,7 @@ def __init__(self, config: CGConfig, workflow: Workflow):
         self.conda_binary: str | None = None
         self.platform: str | None = None
         self.params: str | None = None
-        self.config: str | None = None
+        self.workflow_config_path: str | None = None
         self.resources: str | None = None
         self.tower_binary_path: str | None = None
         self.tower_workflow: str | None = None
@@ -136,7 +136,7 @@ def get_nextflow_config_content(self, case_id: str) -> str:
         """Return nextflow config content."""
         config_files_list: list[str] = [
             self.platform,
-            self.config,
+            self.workflow_config_path,
             self.resources,
         ]
         extra_parameters_str: list[str] = [
diff --git a/cg/meta/workflow/raredisease.py b/cg/meta/workflow/raredisease.py
index adc371616b..694c78a574 100644
--- a/cg/meta/workflow/raredisease.py
+++ b/cg/meta/workflow/raredisease.py
@@ -56,7 +56,7 @@ def __init__(
         self.conda_binary: str = config.raredisease.conda_binary
         self.platform: str = config.raredisease.platform
         self.params: str = config.raredisease.params
-        self.config: str = config.raredisease.config
+        self.workflow_config_path: str = config.raredisease.config
         self.resources: str = config.raredisease.resources
         self.tower_binary_path: str = config.tower_binary_path
         self.tower_workflow: str = config.raredisease.tower_workflow
diff --git a/cg/meta/workflow/rnafusion.py b/cg/meta/workflow/rnafusion.py
index 14c3da4afe..1df69e55ef 100644
--- a/cg/meta/workflow/rnafusion.py
+++ b/cg/meta/workflow/rnafusion.py
@@ -35,7 +35,7 @@ def __init__(
         self.conda_binary: str = config.rnafusion.conda_binary
         self.platform: str = config.rnafusion.platform
         self.params: str = config.rnafusion.params
-        self.config: str = config.rnafusion.config
+        self.workflow_config_path: str = config.rnafusion.config
         self.resources: str = config.rnafusion.resources
         self.tower_binary_path: str = config.tower_binary_path
         self.tower_workflow: str = config.rnafusion.tower_workflow
diff --git a/cg/meta/workflow/tomte.py b/cg/meta/workflow/tomte.py
index 9eb4aa7df6..2b1204c5ec 100644
--- a/cg/meta/workflow/tomte.py
+++ b/cg/meta/workflow/tomte.py
@@ -31,7 +31,7 @@ def __init__(
         self.conda_binary: str = config.tomte.conda_binary
         self.platform: str = config.tomte.platform
         self.params: str = config.tomte.params
-        self.config: str = config.tomte.config
+        self.workflow_config_path: str = config.tomte.config
         self.resources: str = config.tomte.resources
         self.tower_binary_path: str = config.tower_binary_path
         self.tower_workflow: str = config.tomte.tower_workflow