From 415ff993746c5150fd2c17a4523c4dca4107a757 Mon Sep 17 00:00:00 2001 From: Henrik Stranneheim Date: Wed, 20 Nov 2024 11:14:17 +0100 Subject: [PATCH] feat(refactor): (#3957) ### Changed - Refactor get-families-with-samples --- cg/store/crud/read.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/cg/store/crud/read.py b/cg/store/crud/read.py index b2cf67c277..29cbbf33f6 100644 --- a/cg/store/crud/read.py +++ b/cg/store/crud/read.py @@ -1015,7 +1015,7 @@ def get_cases_with_analyzes(self) -> Query: """Return all cases in the database with an analysis.""" return self._get_outer_join_cases_with_analyses_query() - def get_families_with_samples(self) -> Query: + def get_cases_with_samples(self) -> Query: """Return all cases in the database with samples.""" return self._get_join_cases_with_samples_query() @@ -1218,7 +1218,7 @@ def observations_to_upload(self, workflow: Workflow = None) -> Query: CaseFilter.WITH_LOQUSDB_SUPPORTED_SEQUENCING_METHOD, ] records: Query = apply_case_filter( - cases=self.get_families_with_samples(), + cases=self.get_cases_with_samples(), filter_functions=case_filter_functions, workflow=workflow, ) @@ -1229,7 +1229,7 @@ def observations_to_upload(self, workflow: Workflow = None) -> Query: def observations_uploaded(self, workflow: Workflow = None) -> Query: """Return observations that have been uploaded.""" records: Query = apply_case_filter( - cases=self.get_families_with_samples(), + cases=self.get_cases_with_samples(), filter_functions=[CaseFilter.WITH_LOQUSDB_SUPPORTED_WORKFLOW], workflow=workflow, )