diff --git a/cg/constants/constants.py b/cg/constants/constants.py index 594a229324..427621b7c7 100644 --- a/cg/constants/constants.py +++ b/cg/constants/constants.py @@ -261,7 +261,7 @@ class MicrosaltAppTags(StrEnum): class MutantQC: EXTERNAL_NEGATIVE_CONTROL_READS_THRESHOLD: int = 100000 INTERNAL_NEGATIVE_CONTROL_READS_THRESHOLD: int = 2000 - FRACTION_OF_SAMPLES_WITH_FAILED_QC_TRESHOLD: float = 0.2 + FRACTION_OF_SAMPLES_WITH_FAILED_QC_THRESHOLD: float = 0.2 QUALITY_REPORT_FILE_NAME: str = f"QC_report{FileExtensions.JSON}" diff --git a/cg/meta/workflow/mutant/quality_controller/quality_controller.py b/cg/meta/workflow/mutant/quality_controller/quality_controller.py index a377a78261..1638a1ca80 100644 --- a/cg/meta/workflow/mutant/quality_controller/quality_controller.py +++ b/cg/meta/workflow/mutant/quality_controller/quality_controller.py @@ -206,7 +206,7 @@ def _samples_pass_qc(samples_quality_results: SamplesQualityResults) -> bool: samples_quality_results.failed_samples_count / samples_quality_results.total_samples_count ) - return fraction_failed_samples < MutantQC.FRACTION_OF_SAMPLES_WITH_FAILED_QC_TRESHOLD + return fraction_failed_samples < MutantQC.FRACTION_OF_SAMPLES_WITH_FAILED_QC_THRESHOLD def _get_internal_negative_control_id_for_case(self, case: Case) -> str: """Query lims to retrive internal_negative_control_id for a mutant case sequenced in one pool."""