From 0e57efdc76dfc6a17b1176dae092600acf3917da Mon Sep 17 00:00:00 2001 From: peterpru Date: Thu, 11 Jan 2024 10:29:59 +0100 Subject: [PATCH] use general tower binary path --- cg/cli/workflow/raredisease/base.py | 1 - cg/meta/workflow/raredisease.py | 2 +- cg/models/cg_config.py | 1 - 3 files changed, 1 insertion(+), 3 deletions(-) diff --git a/cg/cli/workflow/raredisease/base.py b/cg/cli/workflow/raredisease/base.py index a85e1e7f8a..93ee369ff9 100644 --- a/cg/cli/workflow/raredisease/base.py +++ b/cg/cli/workflow/raredisease/base.py @@ -9,7 +9,6 @@ from cg.cli.workflow.commands import ARGUMENT_CASE_ID, OPTION_DRY from cg.constants.constants import DRY_RUN, MetaApis from cg.meta.workflow.analysis import AnalysisAPI -from cg.cli.workflow.commands import ARGUMENT_CASE_ID from cg.meta.workflow.raredisease import RarediseaseAnalysisAPI from cg.models.cg_config import CGConfig from cg.exc import CgError diff --git a/cg/meta/workflow/raredisease.py b/cg/meta/workflow/raredisease.py index b322fea2be..b732f669cc 100644 --- a/cg/meta/workflow/raredisease.py +++ b/cg/meta/workflow/raredisease.py @@ -32,7 +32,7 @@ def __init__( self.profile: str = config.raredisease.profile self.conda_env: str = config.raredisease.conda_env self.conda_binary: str = config.raredisease.conda_binary - self.tower_binary_path: str = config.raredisease.tower_binary_path + self.tower_binary_path: str = config.tower_binary_path self.tower_pipeline: str = config.raredisease.tower_pipeline self.account: str = config.raredisease.slurm.account self.compute_env: str = config.raredisease.compute_env diff --git a/cg/models/cg_config.py b/cg/models/cg_config.py index 173d10b91f..196443798e 100644 --- a/cg/models/cg_config.py +++ b/cg/models/cg_config.py @@ -159,7 +159,6 @@ class RarediseaseConfig(CommonAppConfig): revision: str root: str slurm: SlurmConfig - tower_binary_path: str tower_pipeline: str