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"a14bc488-3040-4b00-9dc1-f6467924858a" ClimaAtmos = "b2c96348-7fb7-4fe0-8da9-78d88439e717" +ClimaCoupler = "4ade58fe-a8da-486c-bd89-46df092ec0c7" ClimaLand = "08f4d4ce-cf43-44bb-ad95-9d2d5f413532" Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" diff --git a/calibration/Manifest.toml b/calibration/Manifest.toml new file mode 100644 index 0000000000..f2fa1e1332 --- /dev/null +++ b/calibration/Manifest.toml @@ -0,0 +1,2894 @@ +# This file is machine-generated - editing it directly is not advised + +julia_version = "1.10.4" +manifest_format = "2.0" +project_hash = "6698e749995e6f2b0fb8dd510e31064a0dee01ad" + +[[deps.ADTypes]] +git-tree-sha1 = "aa4d425271a914d8c4af6ad9fccb6eb3aec662c7" +uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" +version = "1.6.1" +weakdeps = ["ChainRulesCore", "EnzymeCore"] + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesEnzymeCoreExt = "EnzymeCore" + +[[deps.AMD]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] 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["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" +version = "1.4.1+1" diff --git a/calibration/Project.toml b/calibration/Project.toml new file mode 100644 index 0000000000..aaf267d997 --- /dev/null +++ b/calibration/Project.toml @@ -0,0 +1,22 @@ +[deps] +ArgParse = "c7e460c6-2fb9-53a9-8c5b-16f535851c63" +ArtifactWrappers = "a14bc488-3040-4b00-9dc1-f6467924858a" +ClimaAtmos = "b2c96348-7fb7-4fe0-8da9-78d88439e717" +ClimaCalibrate = "4347a170-ebd6-470c-89d3-5c705c0cacc2" +ClimaComms = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d" +ClimaCore = "d414da3d-4745-48bb-8d80-42e94e092884" +ClimaCorePlots = "cf7c7e5a-b407-4c48-9047-11a94a308626" +ClimaCoupler = "4ade58fe-a8da-486c-bd89-46df092ec0c7" +ClimaLand = "08f4d4ce-cf43-44bb-ad95-9d2d5f413532" +ClimaParams = "5c42b081-d73a-476f-9059-fd94b934656c" +ClimaTimeSteppers = "595c0a79-7f3d-439a-bc5a-b232dc3bde79" +ClimaUtilities = "b3f4f4ca-9299-4f7f-bd9b-81e1242a7513" +EnsembleKalmanProcesses = "aa8a2aa5-91d8-4396-bcef-d4f2ec43552d" +Insolation = "e98cc03f-d57e-4e3c-b70c-8d51efe9e0d8" +JLD2 = "033835bb-8acc-5ee8-8aae-3f567f8a3819" +NCDatasets = "85f8d34a-cbdd-5861-8df4-14fed0d494ab" +Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +SciMLBase = "0bca4576-84f4-4d90-8ffe-ffa030f20462" +SurfaceFluxes = "49b00bb7-8bd4-4f2b-b78c-51cd0450215f" +Thermodynamics = "b60c26fb-14c3-4610-9d3e-2d17fe7ff00c" +YAML = "ddb6d928-2868-570f-bddf-ab3f9cf99eb6" diff --git a/calibration/experiments/coupled_held_suarez/Artifacts.toml b/calibration/experiments/coupled_held_suarez/Artifacts.toml new file mode 100644 index 0000000000..c57306fc7e --- /dev/null +++ b/calibration/experiments/coupled_held_suarez/Artifacts.toml @@ -0,0 +1,6 @@ +[atmos_held_suarez_obs] +git-tree-sha1 = "d93ff2958e12d6bba6e8343bfa73554390df52e4" + + [[atmos_held_suarez_obs.download]] + sha256 = "f5d63df2bab849632bd2fcd5a4e3165465d1898e1a5fbee6e5fe07f5b3e57fc3" + url = "https://caltech.box.com/shared/static/sbn6afsgn2xzxi5n0ffs928otstshjvi.gz" diff --git a/calibration/experiments/coupled_held_suarez/forward_model.jl b/calibration/experiments/coupled_held_suarez/forward_model.jl new file mode 100644 index 0000000000..c5bea8bc8b --- /dev/null +++ b/calibration/experiments/coupled_held_suarez/forward_model.jl @@ -0,0 +1,352 @@ +# # Moist Held-Suarez +## This script runs an idealized global circulation model, as in Thatcher and Jablonowski (2016). +## As in the dry Held-Suarez case, this case implements a Newtonian cooling scheme for radiation +## (though with modified parameters), and a Rayleigh damping scheme for dissipation. +## Additionally to the dry case, the model includes moisture with a 0-moment microphysics scheme, +## a prescribed ocean surface and a turbulent surface flux scheme. + +redirect_stderr(IOContext(stderr, :stacktrace_types_limited => Ref(false))) + +#= +## Configuration initialization +=# + +#= +### Package Import +=# + +## standard packages +import Dates +import YAML + +# ## ClimaESM packages +import ClimaComms +@static pkgversion(ClimaComms) >= v"0.6" && ClimaComms.@import_required_backends +import ClimaAtmos as CA +import ClimaCore as CC + +# ## Coupler specific imports +import ClimaCoupler +import ClimaCoupler: + BCReader, + ConservationChecker, + Checkpointer, + Diagnostics, + FieldExchanger, + FluxCalculator, + Interfacer, + Regridder, + TimeManager, + Utilities + +pkg_dir = pkgdir(ClimaCoupler) + +#= +### Helper Functions +=# + +## helpers for component models +include("../../../experiments/ClimaEarth/components/atmosphere/climaatmos.jl") +## helpers for user-specified IO +include("../../../experiments/ClimaEarth/user_io/user_diagnostics.jl") +include("../../../experiments/ClimaEarth/user_io/user_logging.jl") +include("../../../experiments/ClimaEarth/user_io/io_helpers.jl") + +#= +### Setup simulation parameters +Here we follow Thatcher and Jablonowski (2016). +=# + +## run names +job_id = "moist_held_suarez" +coupler_output_dir = "$job_id" +const FT = Float64 +restart_dir = "unspecified" +restart_t = Int(0) + +## coupler simulation specific configuration +Δt_cpl = Float64(400) +t_end = "1000days" +tspan = (Float64(0.0), Float64(time_to_seconds(t_end))) +start_date = "19790301" +hourly_checkpoint = true + +## namelist +config_dict = Dict( + # general + "FLOAT_TYPE" => string(FT), + # file paths + "atmos_config_file" => nothing, + "coupler_toml_file" => nothing, + "coupler_output_dir" => coupler_output_dir, + "mode_name" => "", + "job_id" => job_id, + "atmos_config_repo" => "ClimaAtmos", + # timestepping + "dt" => "$(Δt_cpl)secs", + "dt_save_to_sol" => "1days", + "t_end" => t_end, + "start_date" => "19790301", + # domain + "h_elem" => 4, + "z_elem" => 10, + "z_max" => 30000.0, # semi-high top + "dz_bottom" => 300.0, + "nh_poly" => 4, + # output + "dt_save_to_sol" => "1days", + # numerics + "apply_limiter" => false, + "viscous_sponge" => false, + "rayleigh_sponge" => false, + "vert_diff" => "true", + "hyperdiff" => "CAM_SE", + # run + "surface_setup" => "PrescribedSurface", + # diagnostic (nested with period and short_name) + "output_default_diagnostics" => false, + "diagnostics" => [ + Dict( + "short_name" => + ["mse", "lr", "mass_strf", "stab", "vt", "egr", "ua", "va", "wa", "ta", "rhoa", "pfull"], + "period" => "6hours", + "reduction" => "inst", + ), + ], + # held-suarez specific + "forcing" => "held_suarez", # Newtonian cooling already modified for moisture internally in Atmos + "precip_model" => "0M", + "moist" => "equil", + "prognostic_surface" => "PrescribedSurfaceTemperature", + "turb_flux_partition" => "CombinedStateFluxesMOST", +) +# TODO: may need to switch to Bulk fluxes + +## merge dictionaries of command line arguments, coupler dictionary and component model dictionaries +atmos_config_dict, config_dict = get_atmos_config_dict(config_dict, job_id) +atmos_config_object = CA.AtmosConfig(atmos_config_dict) + +#= +## Setup Communication Context +=# + +comms_ctx = Utilities.get_comms_context(Dict("device" => "auto")) +ClimaComms.init(comms_ctx) + +#= +### I/O Directory Setup +=# + +dir_paths = setup_output_dirs(output_dir = coupler_output_dir, comms_ctx = comms_ctx) +ClimaComms.iamroot(comms_ctx) ? @info(config_dict) : nothing + +#= +## Component Model Initialization +=# + +#= +### Atmosphere +This uses the `ClimaAtmos.jl` model, with parameterization options specified in the `atmos_config_object` dictionary. +=# + +## init atmos model component +atmos_sim = atmos_init(atmos_config_object); +thermo_params = get_thermo_params(atmos_sim) + +#= +### Boundary Space +=# + +## init a 2D boundary space at the surface +boundary_space = CC.Spaces.horizontal_space(atmos_sim.domain.face_space) + +#= +### Surface Model: Prescribed Ocean +=# + +# could overload surface_temperature in atmos as well, but this is more transparent +## idealized SST profile +sst_tj16(ϕ::FT; Δϕ² = FT(26)^2, ΔT = FT(29), T_min = FT(271)) = T_min + ΔT * exp(-ϕ^2 / 2Δϕ²) +ϕ = CC.Fields.coordinate_field(boundary_space).lat + +ocean_sim = Interfacer.SurfaceStub((; + T_sfc = sst_tj16.(ϕ), + ρ_sfc = CC.Fields.zeros(boundary_space), + z0m = FT(5e-4), + z0b = FT(5e-4), + beta = FT(1), + α_direct = CC.Fields.ones(boundary_space) .* FT(1), + α_diffuse = CC.Fields.ones(boundary_space) .* FT(1), + area_fraction = CC.Fields.ones(boundary_space), + phase = TD.Liquid(), + thermo_params = thermo_params, +)) + +#= +## Coupler Initialization +=# + +## coupler exchange fields +coupler_field_names = ( + :T_S, + :z0m_S, + :z0b_S, + :ρ_sfc, + :q_sfc, + :surface_direct_albedo, + :surface_diffuse_albedo, + :beta, + :F_turb_energy, + :F_turb_moisture, + :F_turb_ρτxz, + :F_turb_ρτyz, + :F_radiative, + :P_liq, + :P_snow, + :radiative_energy_flux_toa, + :P_net, + :temp1, + :temp2, +) +coupler_fields = + NamedTuple{coupler_field_names}(ntuple(i -> CC.Fields.zeros(boundary_space), length(coupler_field_names))) +Utilities.show_memory_usage(comms_ctx) + +## model simulations +model_sims = (atmos_sim = atmos_sim, ocean_sim = ocean_sim); + +## dates +date0 = date = Dates.DateTime(start_date, Dates.dateformat"yyyymmdd") +dates = (; date = [date], date0 = [date0], date1 = [Dates.firstdayofmonth(date0)], new_month = [false]) + +#= +## Initialize Callbacks +=# + +checkpoint_cb = TimeManager.HourlyCallback( + dt = FT(480), + func = checkpoint_sims, + ref_date = [dates.date[1]], + active = hourly_checkpoint, +) +update_firstdayofmonth!_cb = TimeManager.MonthlyCallback( + dt = FT(1), + func = TimeManager.update_firstdayofmonth!, + ref_date = [dates.date1[1]], + active = true, +) +callbacks = (; checkpoint = checkpoint_cb, update_firstdayofmonth! = update_firstdayofmonth!_cb) + +#= +## Initialize turbulent fluxes +=# +turbulent_fluxes = nothing +if config_dict["turb_flux_partition"] == "CombinedStateFluxesMOST" + turbulent_fluxes = FluxCalculator.CombinedStateFluxesMOST() +else + error("turb_flux_partition must be CombinedStateFluxesMOST") +end + +#= +## Initialize Coupled Simulation +=# + +cs = Interfacer.CoupledSimulation{FT}( + comms_ctx, + dates, + boundary_space, + coupler_fields, + config_dict, + nothing, # conservation checks + [tspan[1], tspan[2]], + atmos_sim.integrator.t, + Δt_cpl, + (; land = zeros(boundary_space), ocean = ones(boundary_space), ice = zeros(boundary_space)), + model_sims, + (;), # mode_specifics + (), # coupler diagnostics + callbacks, + dir_paths, + turbulent_fluxes, + thermo_params, +); + +#= +## Restart component model states if specified in the config_dict +=# + +if restart_dir !== "unspecified" + for sim in cs.model_sims + if Checkpointer.get_model_prog_state(sim) !== nothing + Checkpointer.restart_model_state!(sim, comms_ctx, restart_t; input_dir = restart_dir) + end + end +end + +#= +## Initialize Component Model Exchange +=# + +# 1.surface density (`ρ_sfc`): calculated by the coupler by adiabatically extrapolating atmospheric thermal state to the surface. +# For this, we need to import surface and atmospheric fields. The model sims are then updated with the new surface density. +FieldExchanger.import_combined_surface_fields!(cs.fields, cs.model_sims, cs.turbulent_fluxes) +FieldExchanger.import_atmos_fields!(cs.fields, cs.model_sims, cs.boundary_space, cs.turbulent_fluxes) +FieldExchanger.update_model_sims!(cs.model_sims, cs.fields, cs.turbulent_fluxes) + +# 2.surface vapor specific humidity (`q_sfc`): step surface models with the new surface density to calculate their respective `q_sfc` internally +Interfacer.step!(ocean_sim, Δt_cpl) + +# 3.turbulent fluxes +## import the new surface properties into the coupler (note the atmos state was also imported in step 3.) +FieldExchanger.import_combined_surface_fields!(cs.fields, cs.model_sims, cs.turbulent_fluxes) # i.e. T_sfc, albedo, z0, beta, q_sfc +## calculate turbulent fluxes inside the atmos cache based on the combined surface state in each grid box +FluxCalculator.combined_turbulent_fluxes!(cs.model_sims, cs.fields, cs.turbulent_fluxes) # this updates the atmos thermo state, sfc_ts + +# 4.reinitialize models + radiative flux: prognostic states and time are set to their initial conditions. +FieldExchanger.reinit_model_sims!(cs.model_sims) + +# 5.update all fluxes: coupler re-imports updated atmos fluxes +FieldExchanger.import_atmos_fields!(cs.fields, cs.model_sims, cs.boundary_space, cs.turbulent_fluxes) +FieldExchanger.update_model_sims!(cs.model_sims, cs.fields, cs.turbulent_fluxes) + +#= +## Coupling Loop +=# + +function solve_coupler!(cs) + (; model_sims, Δt_cpl, tspan, comms_ctx) = cs + + ClimaComms.iamroot(comms_ctx) && @info("Starting coupling loop") + ## step in time + for t in ((tspan[begin] + Δt_cpl):Δt_cpl:tspan[end]) + + cs.dates.date[1] = TimeManager.current_date(cs, t) + + ## print date on the first of month + if cs.dates.date[1] >= cs.dates.date1[1] + ClimaComms.iamroot(comms_ctx) && @show(cs.dates.date[1]) + end + ClimaComms.barrier(comms_ctx) + + ## run component models sequentially for one coupling timestep (Δt_cpl) + FieldExchanger.update_model_sims!(cs.model_sims, cs.fields, cs.turbulent_fluxes) + + ## step sims + FieldExchanger.step_model_sims!(cs.model_sims, t) + + ## exchange combined fields and (if specified) calculate fluxes using combined states + FieldExchanger.import_combined_surface_fields!(cs.fields, cs.model_sims, cs.turbulent_fluxes) # i.e. T_sfc, surface_albedo, z0, beta + FluxCalculator.combined_turbulent_fluxes!(cs.model_sims, cs.fields, cs.turbulent_fluxes) + + FieldExchanger.import_atmos_fields!(cs.fields, cs.model_sims, cs.boundary_space, cs.turbulent_fluxes) + + ## callback to update the fist day of month + TimeManager.trigger_callback!(cs, cs.callbacks.update_firstdayofmonth!) + + ## callback to checkpoint model state + TimeManager.trigger_callback!(cs, cs.callbacks.checkpoint) + + end + + return nothing +end diff --git a/calibration/experiments/coupled_held_suarez/model_interface.jl b/calibration/experiments/coupled_held_suarez/model_interface.jl new file mode 100644 index 0000000000..0d1de2f3c7 --- /dev/null +++ b/calibration/experiments/coupled_held_suarez/model_interface.jl @@ -0,0 +1,32 @@ +import ClimaCalibrate: set_up_forward_model, run_forward_model, path_to_ensemble_member, ExperimentConfig +import ClimaComms +@static pkgversion(ClimaComms) >= v"0.6" && ClimaComms.@import_required_backends +using ClimaUtilities.ClimaArtifacts +import YAML + +using ClimaCoupler + +""" + set_up_forward_model(member, iteration, experiment_dir::AbstractString) + +Return CoupledSimulation object for the given member and iteration. + +Turns off default diagnostics and sets the TOML parameter file to the member's path. +""" +function set_up_forward_model(member, iteration, experiment_dir::AbstractString) + include(joinpath(experiment_dir,"forward_model.jl")); + output_dir = cs.parsed_args["coupler_output_dir"] + cs.parsed_args["coupler_output_dir"] = joinpath(experiment_dir,"output", output_dir); + return cs +end + +""" + run_forward_model(coupled_simulation) + +Run the coupled model with the given a coupled simulation object. +Currently only has basic error handling. +""" +function run_forward_model(cs) + sol_res = solve_coupler!(cs); + return sol_res +end diff --git a/calibration/experiments/coupled_held_suarez/moist_held_suarez/moist_held_suarez/clima_atmos/output_0000/.yml b/calibration/experiments/coupled_held_suarez/moist_held_suarez/moist_held_suarez/clima_atmos/output_0000/.yml new file mode 100644 index 0000000000..cadd6349ad --- /dev/null +++ b/calibration/experiments/coupled_held_suarez/moist_held_suarez/moist_held_suarez/clima_atmos/output_0000/.yml @@ -0,0 +1,125 @@ +sleve_eta: 0.7 +surface_thermo_state_type: "GCMSurfaceThermoState" +external_forcing_file: ~ +topo_smoothing: false +hyperdiff: "CAM_SE" +dt: "400.0secs" +output_dir: "moist_held_suarez/moist_held_suarez/clima_atmos" +prognostic_tke: false +override_τ_precip: true +use_newton_rtol: false +netcdf_output_at_levels: true +output_dir_style: "ActiveLink" +external_forcing: ~ +device: "auto" +t_end: "1000days" +dz_top: 5000.0 +y_elem: 6 +z_stretch: true +bubble: true +ode_algo: "SSPKnoth" +max_newton_iters_ode: 1 +start_date: "19790301" +forcing: "held_suarez" +edmfx_nh_pressure: false +scalar_hyperdiffusion_coefficient: 1.5 +prognostic_surface: "PrescribedSurfaceTemperature" +test_dycore_consistency: false +add_isothermal_boundary_layer: true +restart_file: ~ +rad: ~ +edmf_coriolis: ~ +moist: "equil" +rayleigh_sponge: false +initial_condition: "DecayingProfile" +cloud_model: "quadrature" +krylov_rtol: 0.1 +divergence_damping_factor: 1.0 +edmfx_entr_model: ~ +eisenstat_walker_forcing_alpha: 2.0 +dt_cloud_fraction: "3hours" +smoothing_order: 3 +idealized_h2o: false +surface_setup: "PrescribedSurface" +perturb_initstate: true +implicit_sgs_advection: false +jvp_step_adjustment: 1.0 +discrete_hydrostatic_balance: false +insolation: "idealized" +log_progress: true +dz_bottom: 300.0 +h_elem: 4 +dt_save_state_to_disk: "Inf" +netcdf_interpolation_num_points: ~ +advection_test: false +z_max: 30000.0 +apply_limiter: false +topography: "NoWarp" +aerosol_radiation: false +reference_job_id: ~ +precip_model: "0M" +vorticity_hyperdiffusion_coefficient: 1.5 +perf_summary: false +call_cloud_diagnostics_per_stage: false +viscous_sponge: false +surface_temperature: "ZonallySymmetric" +edmfx_filter: false +diagnostics: + - short_name: + - "mse" + - "lr" + - "mass_strf" + - "stab" + - "vt" + - "egr" + - "ua" + - "va" + - "wa" + - "ta" + - "rhoa" + - "pfull" + period: "6hours" + reduction: "inst" +orographic_gravity_wave: ~ +dt_rad: "6hours" +approximate_linear_solve_iters: 1 +edmfx_upwinding: "none" +tracer_upwinding: "none" +enable_diagnostics: true +nh_poly: 4 +edmfx_sgs_diffusive_flux: false +y_max: 300000.0 +non_orographic_gravity_wave: false +albedo_model: "ConstantAlbedo" +config: "sphere" +energy_upwinding: "none" +FLOAT_TYPE: "Float64" +deep_atmosphere: false +split_ode: true +updraft_number: 1 +regression_test: false +check_conservation: false +ls_adv: ~ +prescribed_aerosols: [] +output_default_diagnostics: false +implicit_diffusion: false +x_max: 300000.0 +edmfx_sgs_mass_flux: false +z_elem: 10 +newton_rtol: 1.0e-5 +edmfx_sgsflux_upwinding: "none" +turbconv: ~ +x_elem: 6 +idealized_clouds: false +vert_diff: "true" +check_nan_every: 1024 +use_krylov_method: false +subsidence: ~ +sleve_s: 10.0 +use_dynamic_krylov_rtol: false +toml: + - "/Users/akshaysridhar/Research/Codes/ClimaCoupler.jl/toml/default_coarse.toml" +mesh_warp_type: "Linear" +edmfx_detr_model: ~ +zero_tendency: ~ +dt_save_to_sol: "1days" diff --git a/calibration/experiments/coupled_held_suarez/moist_held_suarez/moist_held_suarez/clima_atmos/output_0000/_parameters.toml b/calibration/experiments/coupled_held_suarez/moist_held_suarez/moist_held_suarez/clima_atmos/output_0000/_parameters.toml new file mode 100644 index 0000000000..3580b40d09 --- /dev/null +++ b/calibration/experiments/coupled_held_suarez/moist_held_suarez/moist_held_suarez/clima_atmos/output_0000/_parameters.toml @@ -0,0 +1,581 @@ +[optics_lookup_temperature_min] +used_in = ["ClimaAtmos"] +value = 160 +type = "float" +description = "Miminum temperature in the lookup table for optical properties in RRTMGP" + +[f_plane_coriolis_frequency] +used_in = ["ClimaAtmos"] +value = 0 +type = "float" + +[orbit_eccentricity_at_epoch] +used_in = ["Insolation"] +value = 0.016708634 +type = "float" + +[potential_temperature_reference_pressure] +used_in = ["Thermodynamics"] +value = 100000 +type = "float" +description = "Reference pressure used in potential temperature definition" + +[prandtl_number_0_businger] +used_in = ["SurfaceFluxes"] +value = 0.74 +type = "float" +description = "Pr_0 for Businger universal functions. From Businger et al, 1971. DOI: 10.1175/1520-0469(1971)028<0181:FPRITA>2.0.CO;2." + +[mixing_length_tke_surf_scale] +used_in = ["ClimaAtmos"] +value = 3.75 +type = "float" +description = "Ratio of turbulence kinetic energy to squared friction velocity in the surface layer for the EDMF mixing length closure; denoted κ_*². See Lopez-Gomez et al. (2020) [https://doi.org/10.1029/2020MS002162], Table 1. Note: the square root, i.e. κ_*, is listed in the reference." + +[temperature_triple_point] +used_in = ["Thermodynamics"] +value = 273.16 +type = "float" + +[length_orbit_semi_major] +used_in = ["Insolation"] +value = 149597870000 +type = "float" +description = "derived: 1 * [astronomical_unit]" + +[SST_wavelength] +used_in = ["ClimaAtmos"] +value = 6000000 +type = "float" +description = "Wavelength of the sea surface temperature sinusoid for RCEMIPII box models. See Wing et al. (2018) [https://gmd.copernicus.org/articles/11/793/2018/]" + +[isobaric_specific_heat_ice] +used_in = ["Thermodynamics"] +value = 2100 +type = "float" + +[mixing_length_smin_rm] +used_in = ["ClimaAtmos"] +value = 1.5 +type = "float" +description = "Upper ratio limit for smooth minimum function in mixing length closure. See Lopez-Gomez et al. (2020) Eq 40 [https://doi.org/10.1029/2020MS002161]." + +[C_E] +used_in = ["ClimaAtmos"] +value = 0.044 +type = "float" +description = "vertical diffusion coefficient" + +[latent_heat_sublimation_at_reference] +used_in = ["Thermodynamics"] +value = 2834400 +type = "float" + +[day] +used_in = ["Insolation"] +value = 86400 +type = "float" + +[isobaric_specific_heat_vapor] +used_in = ["Thermodynamics"] +value = 1859 +type = "float" + +[EDMF_surface_area] +used_in = ["ClimaAtmos"] +value = 0.1 +type = "float" +description = "Combined updraft surface area fraction; used to compute boundary conditions for prognostic updraft variables. The surface area for each updraft is `surface_area / N_updrafts`. See Cohen et al. (2020) [https://doi.org/10.1029/2020MS002162], Table 2." + +[c_smag] +used_in = ["ClimaAtmos"] +value = 0.2 +type = "float" +description = "Smagorinsky coefficient" + +[mixing_length_smin_ub] +used_in = ["ClimaAtmos"] +value = 0.1 +type = "float" +description = "Lower limit for smooth minimum function in mixing length closure. See Lopez-Gomez et al. (2020) Eq 40 [https://doi.org/10.1029/2020MS002161]." + +[molar_mass_water] +used_in = ["Thermodynamics", "RRTMGP"] +value = 0.01801528 +type = "float" + +[most_stability_exponent_businger] +used_in = ["SurfaceFluxes"] +value = 4.42 +type = "float" +description = "γ for Businger universal functions. From Businger et al, 1971. DOI: 10.1175/1520-0469(1971)028<0181:FPRITA>2.0.CO;2." + +[temperature_saturation_adjustment_min] +used_in = ["Thermodynamics"] +value = 1 +type = "float" + +[SST_wavelength_latitude] +used_in = ["ClimaAtmos"] +value = 54 +type = "float" +description = "Wavelength of the sea surface temperature sinusoid for RCEMIPII sphere models. See Wing et al. (2018) [https://gmd.copernicus.org/articles/11/793/2018/]" + +[min_area_limiter_power] +used_in = ["ClimaAtmos"] +value = 10 +type = "float" +description = "Constant coefficient for the exponent in the minimum area limiter term in entrainment. Parameter not described in the literature." + +[pressure_normalmode_drag_coeff] +used_in = ["ClimaAtmos"] +value = 10.0 +type = "float" +description = "Updraft pressure drag coefficent in perturbation pressure closure. See He et al. 2022 Eq 34 [https://doi.org/10.1002/essoar.10505084.2]." + +[held_suarez_T_equator_dry] +used_in = ["ClimaAtmos"] +value = 315 +type = "float" +description = "Equator temperature. See Held and Suarez (1994) https://doi.org/10.1175/1520-0477(1994)075%3C1825:APFTIO%3E2.0.CO;2" + +[mixing_length_Prandtl_number_0] +used_in = ["ClimaAtmos"] +value = 0.74 +type = "float" +description = "Turbulent Prandtl number in neutral conditions; denoted Pr_{t,0}. See Lopez-Gomez et al. (2020) [https://doi.org/10.1029/2020MS002162], Table 1 and Eq 36." + +[longitude_perihelion_at_epoch] +used_in = ["Insolation"] +value = 4.938188299449 +type = "float" +description = "(282.937348 degrees) in radians" + +[stefan_boltzmann_constant] +used_in = ["RRTMGP"] +value = 5.67e-8 +type = "float" + +[temperature_min_at_reference] +used_in = ["Thermodynamics"] +value = 220 +type = "float" + +[entropy_water_vapor] +used_in = ["Thermodynamics"] +value = 10513.6 +type = "float" + +[equator_pole_temperature_gradient_wet] +used_in = ["ClimaAtmos"] +value = 65 +type = "float" +description = "Temperature gradient between equator and pole for moist adiabatic atmosphere. See Held and Suarez (1994) https://doi.org/10.1175/1520-0477(1994)075%3C1825:APFTIO%3E2.0.CO;2" + +[held_suarez_T_equator_wet] +used_in = ["ClimaAtmos"] +value = 294 +type = "float" +description = "Equator temperature. See Held and Suarez (1994) https://doi.org/10.1175/1520-0477(1994)075%3C1825:APFTIO%3E2.0.CO;2" + +[entropy_dry_air] +used_in = ["Thermodynamics"] +value = 6864.8 +type = "float" + +[zd_rayleigh] +used_in = ["ClimaAtmos"] +value = 15000.0 +type = "float" +description = "rayleigh sponge height" + +[coefficient_a_m_businger] +used_in = ["SurfaceFluxes"] +value = 4.7 +type = "float" +description = "a_m for Businger momentum universal functions. From Businger et al, 1971. DOI: 10.1175/1520-0469(1971)028<0181:FPRITA>2.0.CO;2." + +[temperature_saturation_adjustment_max] +used_in = ["Thermodynamics"] +value = 1000 +type = "float" + +[density_ice_water] +used_in = ["CloudMicrophysics"] +value = 916.7 +type = "float" + +[mean_anomalistic_at_epoch] +used_in = ["Insolation"] +value = 6.24006014121 +type = "float" +description = "(357.52911 degrees) in radians" + +[mixing_length_diss_coeff] +used_in = ["ClimaAtmos"] +value = 0.22 +type = "float" +description = "Turbulence kinetic energy dissipation coefficient for the EDMF mixing length closure; denoted c_d. See Lopez-Gomez et al. (2020) [https://doi.org/10.1029/2020MS002162], Table 1." + +[potential_temp_vertical_gradient] +used_in = ["ClimaAtmos"] +value = 10 +type = "float" +description = "Potential temperature gradient with height. See Held and Suarez (1994) https://doi.org/10.1175/1520-0477(1994)075%3C1825:APFTIO%3E2.0.CO;2" + +[EDMF_max_area] +used_in = ["ClimaAtmos"] +value = 0.9 +type = "float" +description = "Maximum area fraction per updraft. Parameter not described in the literature." + +[entr_coeff] +used_in = ["ClimaAtmos"] +value = 1 +type = "float" +description = "TODO: Remove this. Constant entrainment coefficient used for testing EDMF" + +[mixing_length_Ri_crit] +used_in = ["ClimaAtmos"] +value = 0.25 +type = "float" +description = "Critical gradient Richardson number. It is an upper limit to the gradient Richardson number . See Li (2019) [https://doi.org/10.1016/j.atmosres.2018.09.015], Section 6.2 for details." + +[temperature_saturation_adjustment_init_min] +used_in = ["Thermodynamics"] +value = 150 +type = "float" + +[optics_lookup_temperature_max] +used_in = ["ClimaAtmos"] +value = 355 +type = "float" +description = "Maximum temperature in the lookup table for optical properties in RRTMGP" + +[gas_constant] +used_in = ["Thermodynamics", "RRTMGP"] +value = 8.3144598 +type = "float" + +[orbit_obliquity_at_epoch] +used_in = ["Insolation"] +value = 0.408979125113246 +type = "float" +description = "(23.432777778 degrees) in radians" + +[drag_layer_vertical_extent] +used_in = ["ClimaAtmos"] +value = 0.7 +type = "float" +description = "Vertical extend of drag layer. See Held and Suarez (1994) https://doi.org/10.1175/1520-0477(1994)075%3C1825:APFTIO%3E2.0.CO;2" + +[temperature_mean_at_reference] +used_in = ["Thermodynamics"] +value = 290 +type = "float" + +[detr_inv_tau] +used_in = ["ClimaAtmos"] +value = 900 +type = "float" +description = "Detrainment timescale" + +[entr_inv_tau] +used_in = ["ClimaAtmos"] +value = 900 +type = "float" +description = "Entrainment timescale" + +[temperature_homogenous_nucleation] +used_in = ["Thermodynamics"] +value = 233 +type = "float" + +[mixing_length_static_stab_coeff] +used_in = ["ClimaAtmos"] +value = 0.4 +type = "float" +description = "Static stability coefficient for the EDMF mixing length closure; denoted c_b. See Lopez-Gomez et al. (2020) [https://doi.org/10.1029/2020MS002162], Table 1." + +[pressure_normalmode_buoy_coeff1] +used_in = ["ClimaAtmos"] +value = 0.12 +type = "float" +description = "Pressure buoyancy coefficient (encapsulating virtual mass loading effect) in perturbation pressure closure. See He et al. 2022 Eq 34 [https://doi.org/10.1002/essoar.10505084.2]." + +[held_suarez_minimum_temperature] +used_in = ["ClimaAtmos"] +value = 200 +type = "float" +description = "Minimum temperature. See Held and Suarez (1994) https://doi.org/10.1175/1520-0477(1994)075%3C1825:APFTIO%3E2.0.CO;2" + +[angular_velocity_planet_rotation] +used_in = ["ClimaAtmos"] +value = 7.2921159e-5 +type = "float" + +[min_area_limiter_scale] +used_in = ["ClimaAtmos"] +value = 0.001 +type = "float" +description = "Constant coefficient that scales the minimum area limiter term in entrainment. Parameter not described in the literature." + +[entropy_reference_temperature] +used_in = ["Thermodynamics"] +value = 298.15 +type = "float" + +[most_stability_parameter_businger] +used_in = ["SurfaceFluxes"] +value = 2.5 +type = "float" +description = "ζ_a for Businger universal functions. From Businger et al, 1971. DOI: 10.1175/1520-0469(1971)028<0181:FPRITA>2.0.CO;2." + +[molar_mass_dry_air] +used_in = ["Thermodynamics", "RRTMGP"] +value = 0.02897 +type = "float" + +[zd_viscous] +used_in = ["ClimaAtmos"] +value = 15000.0 +type = "float" +description = "viscous sponge height" + +[planet_radius] +used_in = ["ClimaAtmos"] +value = 6371000 +type = "float" + +[water_refractive_index] +used_in = ["ClimaAtmos"] +value = 1.34 +type = "float" +description = "The relative refractive index of water and air for broadband ocean surface albedo calculation. See Jin et al. (2011) [https://opg.optica.org/oe/fulltext.cfm?uri=oe-19-27-26429&id=225797]" + +[adiabatic_exponent_dry_air] +used_in = ["Thermodynamics", "RRTMGP"] +value = 0.28571428571 +type = "float" +description = "(2/7)" + +[epoch_time] +used_in = ["Insolation"] +value = 211813488000 +type = "float" +description = "derived: 2451545.0 * [day]" + +[detr_buoy_coeff] +used_in = ["ClimaAtmos"] +value = 0.12 +type = "float" +description = "Coefficient for the b/w^2 term in the detrainment closure. See Tan et al. (2018) [https://doi.org/10.1002/2017MS001162], Eq 27." + +[specific_humidity_precipitation_threshold] +used_in = ["CloudMicrophysics"] +value = 5.0e-6 +type = "float" +description = "0-moment microphysics precipitation formation threshold as specific humidity [-]" + +[density_liquid_water] +used_in = ["CloudMicrophysics"] +value = 1000 +type = "float" + +[supersaturation_precipitation_threshold] +used_in = ["CloudMicrophysics"] +value = 0.02 +type = "float" +description = "0-moment microphysics precipitation formation threshold as supersaturation [-]" + +[detr_massflux_vertdiv_coeff] +used_in = ["ClimaAtmos"] +value = 1 +type = "float" +description = "Coefficient for the mass flux vertical divergence term in the detrainment closure. Parameter not described in the literature." + +[coefficient_b_m_businger] +used_in = ["SurfaceFluxes"] +value = 15.0 +type = "float" +description = "b_m for Businger momentum universal functions. From Businger et al, 1971. DOI: 10.1175/1520-0469(1971)028<0181:FPRITA>2.0.CO;2." + +[precipitation_timescale] +used_in = ["CloudMicrophysics"] +value = 400.0 +type = "float" +description = "0-moment microphysics precipitation formation timescale [s]" + +[C_H] +used_in = ["ClimaAtmos"] +value = 0.0044 +type = "float" +description = "bulk transfer coefficient" + +[EDMF_min_area] +used_in = ["ClimaAtmos"] +value = 1.0e-5 +type = "float" +description = "Minimum area fraction per updraft. Parameter not described in the literature." + +[isobaric_specific_heat_liquid] +used_in = ["Thermodynamics"] +value = 4181 +type = "float" + +[latent_heat_vaporization_at_reference] +used_in = ["Thermodynamics"] +value = 2500800 +type = "float" + +[detr_vertdiv_coeff] +used_in = ["ClimaAtmos"] +value = 1 +type = "float" +description = "Coefficient for the vertical divergence term in the detrainment closure. Parameter not described in the literature." + +[SST_delta] +used_in = ["ClimaAtmos"] +value = 1.25 +type = "float" +description = "Twice the amplitude of sea surface temperarture sinusoid for RCEMIPII surface conditions. See Wing et al. (2018) [https://gmd.copernicus.org/articles/11/793/2018/]" + +[gravitational_acceleration] +used_in = ["Thermodynamics", "RRTMGP"] +value = 9.81 +type = "float" + +[equator_pole_temperature_gradient_dry] +used_in = ["ClimaAtmos"] +value = 60 +type = "float" +description = "Temperature gradient between equator and pole for dry adiabatic atmosphere. See Held and Suarez (1994) https://doi.org/10.1175/1520-0477(1994)075%3C1825:APFTIO%3E2.0.CO;2" + +[ocean_surface_albedo] +used_in = ["ClimaAtmos"] +value = 0.38 +type = "float" +description = "Ocean surface albedo for idealized simulations. See O'Gorman and Schneider (2008) [https://journals.ametsoc.org/view/journals/clim/21/15/2007jcli2065.1.xml]" + +[coefficient_b_h_businger] +used_in = ["SurfaceFluxes"] +value = 9.0 +type = "float" +description = "b_h for Businger heat universal functions. From Businger et al, 1971. DOI: 10.1175/1520-0469(1971)028<0181:FPRITA>2.0.CO;2." + +[coefficient_a_h_businger] +used_in = ["SurfaceFluxes"] +value = 4.7 +type = "float" +description = "a_h for Businger heat universal functions. From Businger et al, 1971. DOI: 10.1175/1520-0469(1971)028<0181:FPRITA>2.0.CO;2." + +[pow_icenuc] +used_in = ["Thermodynamics"] +value = 1 +type = "float" + +[max_area_limiter_scale] +used_in = ["ClimaAtmos"] +value = 0.1 +type = "float" +description = "Constant coefficient that scales the maximum area limiter term in detrainment. Parameter not described in the literature." + +[avogadro_constant] +used_in = ["RRTMGP"] +value = 6.02214076e23 +type = "float" + +[pressure_triple_point] +used_in = ["Thermodynamics"] +value = 611.657 +type = "float" + +[thermodynamics_temperature_reference] +used_in = ["Thermodynamics"] +value = 273.16 +type = "float" + +[temperature_water_freeze] +used_in = ["Thermodynamics"] +value = 273.15 +type = "float" + +[total_solar_irradiance] +used_in = ["Insolation"] +value = 1362 +type = "float" + +[SST_mean] +used_in = ["ClimaAtmos"] +value = 300 +type = "float" +description = "Mean sea surface temperature for RCEMIPII surface conditions. See Wing et al. (2018) [https://gmd.copernicus.org/articles/11/793/2018/]" + +[detr_coeff] +used_in = ["ClimaAtmos"] +value = 0.001 +type = "float" +description = "TODO: Remove this. Constant detrainment coefficient used for testing EDMF" + +[minimum_updraft_top] +used_in = ["ClimaAtmos"] +value = 500.0 +type = "float" +description = "Minimum updraft height limiter to avoid zero division in pressure drag and entrainment/detrainment closures. Parameter not described in the literature." + +[von_karman_constant] +used_in = ["SurfaceFluxes"] +value = 0.4 +type = "float" + +[mixing_length_eddy_viscosity_coefficient] +used_in = ["ClimaAtmos"] +value = 0.14 +type = "float" +description = "Turbulence kinetic energy diffusivity coefficient for the EDMF mixing length closure; denoted c_m. See Lopez-Gomez et al. (2020) [https://doi.org/10.1029/2020MS002162], Table 1." + +[alpha_rayleigh_w] +used_in = ["ClimaAtmos"] +value = 1.0 +type = "float" +description = "rayleigh sponge vert velocity coeff" + +[mean_sea_level_pressure] +used_in = ["Thermodynamics"] +value = 101325 +type = "float" + +[max_area_limiter_power] +used_in = ["ClimaAtmos"] +value = 10 +type = "float" +description = "Constant coefficient for the exponent in the maximum area limiter term in detrainment. Parameter not described in the literature." + +[anomalistic_year_length] +used_in = ["Insolation"] +value = 31558464 +type = "float" +description = "derived: 365.25 * [day]" + +[alpha_rayleigh_uh] +used_in = ["ClimaAtmos"] +value = 0.0 +type = "float" +description = "rayleigh sponge horizontal velocity coefficient" + +[kappa_2_sponge] +used_in = ["ClimaAtmos"] +value = 1.0e6 +type = "float" +description = "viscous sponge coefficient" + +[astronomical_unit] +used_in = ["ClimaAtmos"] +value = 149597870000 +type = "float" + +[mixing_length_Prandtl_number_scale] +used_in = ["ClimaAtmos"] +value = 4.076923076923077 +type = "float" +description = "Cospectral budget factor for turbulent Prandtl number for the EDMF mixing length closure, denoted ω_pr. In Lopez-Gomez et al. (2020) [https://doi.org/10.1029/2020MS002162], Eq. 36, it is described as a phenomenological constant, denoted by ω₂ and set to 53/13 ≈ 4.0769..." diff --git a/calibration/experiments/coupled_held_suarez/moist_held_suarez/moist_held_suarez/clima_atmos/output_active b/calibration/experiments/coupled_held_suarez/moist_held_suarez/moist_held_suarez/clima_atmos/output_active new file mode 120000 index 0000000000..ca6c61394e --- /dev/null +++ b/calibration/experiments/coupled_held_suarez/moist_held_suarez/moist_held_suarez/clima_atmos/output_active @@ -0,0 +1 @@ +output_0000 \ No newline at end of file diff --git a/calibration/experiments/coupled_held_suarez/observation_map.jl b/calibration/experiments/coupled_held_suarez/observation_map.jl new file mode 100644 index 0000000000..937eadb178 --- /dev/null +++ b/calibration/experiments/coupled_held_suarez/observation_map.jl @@ -0,0 +1,34 @@ +import EnsembleKalmanProcesses: TOMLInterface +import ClimaCalibrate: observation_map, ExperimentConfig +import ClimaAnalysis: SimDir, get, slice, average_lat, average_lon + +function observation_map(iteration) + ensemble_size = 10 + output_dir = joinpath("output", "sphere_held_suarez_rhoe_equilmoist") + single_member_dims = (1,) + G_ensemble = Array{Float64}(undef, single_member_dims..., ensemble_size) + + for m in 1:ensemble_size + member_path = + TOMLInterface.path_to_ensemble_member(output_dir, iteration, m) + simdir_path = joinpath(member_path, "output_active") + if isdir(simdir_path) + simdir = SimDir(simdir_path) + G_ensemble[:, m] .= process_member_data(simdir) + else + G_ensemble[:, m] .= NaN + end + end + return G_ensemble +end + +const meters = 1.0 +const days = 86400.0 +# Cut off first 120 day to get equilibrium, take second level slice +function process_member_data(simdir::SimDir) + isempty(simdir.vars) && return NaN + ta = get(simdir; short_name = "ta", reduction = "average", period = "60d") + zonal_avg_temp_observations = + slice(average_lat(average_lon(ta)), z = 242meters) + return slice(zonal_avg_temp_observations, time = 240days).data +end diff --git a/calibration/experiments/coupled_held_suarez/pipeline.sbatch b/calibration/experiments/coupled_held_suarez/pipeline.sbatch new file mode 100644 index 0000000000..2ca1ce78af --- /dev/null +++ b/calibration/experiments/coupled_held_suarez/pipeline.sbatch @@ -0,0 +1,33 @@ +#!/bin/bash +#SBATCH --time=3:00:00 +#SBATCH --output=coupled_moist_held_suarez.txt + +julia --project=calibration/experiments/coupled_held_suarez -e ' +import Pkg; Pkg.instantiate(;verbose=true) +import JLD2 +using ClimaUtilities.ClimaArtifacts +import ClimaCalibrate: calibrate, ExperimentConfig, CaltechHPCBackend, get_prior, kwargs + +experiment_dir = dirname(Base.active_project()) +include(joinpath(experiment_dir, "observation_map.jl")) +artifact_path = @clima_artifact("atmos_held_suarez_obs") +model_interface = joinpath(experiment_dir, "model_interface.jl") + +# Load data and configurations +n_iterations = 2 +ensemble_size = 10 +observations = JLD2.load_object(joinpath(artifact_path, "obs_mean.jld2")) +noise = JLD2.load_object(joinpath(artifact_path, "obs_noise_cov.jld2")) +prior = get_prior(joinpath(experiment_dir, "prior.toml")) +output_dir = joinpath("output", "coupled_held_suarez_rhoe_equilmoist") + +experiment_config = ExperimentConfig(; n_iterations, ensemble_size, + observations, noise, output_dir, prior) +slurm_kwargs = kwargs(time = 50, ntasks = 16, mem_per_cpu = "8G") +eki = calibrate(CaltechHPCBackend, experiment_config; model_interface, slurm_kwargs, verbose=true) + +include(joinpath(experiment_dir, "postprocessing.jl")) +prior = get_prior(joinpath(experiment_dir, "prior.toml")) +convergence_plot(eki, prior) +scatter_plot(eki) +' diff --git a/calibration/experiments/coupled_held_suarez/postprocessing.jl b/calibration/experiments/coupled_held_suarez/postprocessing.jl new file mode 100644 index 0000000000..8764dd521d --- /dev/null +++ b/calibration/experiments/coupled_held_suarez/postprocessing.jl @@ -0,0 +1,91 @@ +import EnsembleKalmanProcesses as EKP +using EnsembleKalmanProcesses.ParameterDistributions +using EnsembleKalmanProcesses.TOMLInterface +using Distributions +import Statistics: mean +import CairoMakie: Makie +import ClimaCalibrate + +function convergence_plot( + eki::EKP.EnsembleKalmanProcess, + prior::ParameterDistribution; + theta_star = 65.0, + output = joinpath("output", "sphere_held_suarez_rhoe_equilmoist"), +) + u_vec = EKP.get_u(eki) + meanabsdiff²(x, e) = sum(i -> abs(i - x)^2, e) / length(e) + error_vec = map(ensemble -> meanabsdiff²(theta_star, ensemble), u_vec) + spread_vec = map(ensemble -> meanabsdiff²(mean(ensemble), ensemble), u_vec) + phi_vec = transform_unconstrained_to_constrained(prior, u_vec) + u_series = eachcol(reduce(vcat, u_vec)) + phi_series = eachcol(reduce(vcat, phi_vec)) + + f = Makie.Figure(title = "Convergence Plot", resolution = (800, 800)) + + ax = Makie.Axis( + f[1, 1], + xlabel = "Iteration", + ylabel = "Error", + xticks = 0:50, + ) + Makie.lines!(ax, 0.0:(length(error_vec) - 1), error_vec) + + ax = Makie.Axis( + f[1, 2], + xlabel = "Iteration", + ylabel = "Spread", + xticks = 0:50, + ) + Makie.lines!(ax, 0.0:(length(spread_vec) - 1), spread_vec) + + ax = Makie.Axis( + f[2, 1], + xlabel = "Iteration", + ylabel = "Unconstrained Parameters", + xticks = 0:50, + ) + Makie.lines!.(ax, tuple(0.0:(length(u_series[1]) - 1)), u_series) + + ax = Makie.Axis( + f[2, 2], + xlabel = "Iteration", + ylabel = "Constrained Parameters", + xticks = 0:50, + ) + Makie.lines!.(ax, tuple(0.0:(length(phi_series[1]) - 1)), phi_series) + Makie.hlines!(ax, [theta_star], color = :red, linestyle = :dash) + Makie.save(joinpath(output, "convergence.png"), f) +end + +function scatter_plot( + eki, + output = joinpath("output", "sphere_held_suarez_rhoe_equilmoist"), +) + # Define figure with explicit size + f = Makie.Figure(resolution = (800, 600)) + a = Makie.Axis( + f[1, 1], + title = "60-Day Zonal Avg Temp at 242m versus Unconstrained Equator-Pole Temp Gradient", + ylabel = "Parameter Value", + xlabel = "Temperature (K)", + ) + + g = vec.(EKP.get_g(eki; return_array = true)) + u = vec.(EKP.get_u(eki; return_array = true)) + + for (gg, uu) in zip(g, u) + Makie.scatter!(a, gg, uu) + end + + # Save the figure + Makie.save(joinpath(output, "scatter.png"), f) +end + +# Uncomment for easy plotting +# import JLD2 +# iteration = 2 +# output_dir = joinpath("output", "sphere_held_suarez_rhoe_equilmoist") +# eki_filepath = joinpath(ClimaCalibrate.path_to_iteration(output_dir, iteration), "eki_file.jld2") +# eki = JLD2.load_object(eki_filepath) +# prior_path = joinpath("calibration", "experiments", "sphere_held_suarez_rhoe_equilmoist", "prior.toml") +# prior = ClimaCalibrate.get_prior(prior_path) diff --git a/calibration/experiments/coupled_held_suarez/prior.toml b/calibration/experiments/coupled_held_suarez/prior.toml new file mode 100644 index 0000000000..e3f9f6a2f0 --- /dev/null +++ b/calibration/experiments/coupled_held_suarez/prior.toml @@ -0,0 +1,4 @@ +["equator_pole_temperature_gradient_wet"] +prior = "constrained_gaussian(\"equator_pole_temperature_gradient_wet\", 125, 40, 0, Inf)" +constraint = "[bounded_below(0)]" +type = "float" diff --git a/experiments/ClimaEarth/Manifest.toml b/experiments/ClimaEarth/Manifest.toml index cc54d7f495..d98b2c089d 100644 --- a/experiments/ClimaEarth/Manifest.toml +++ b/experiments/ClimaEarth/Manifest.toml @@ -32,9 +32,9 @@ version = "0.4.5" [[deps.Accessors]] deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] -git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425" +git-tree-sha1 = "f61b15be1d76846c0ce31d3fcfac5380ae53db6a" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.36" +version = "0.1.37" [deps.Accessors.extensions] AccessorsAxisKeysExt = "AxisKeys" @@ -472,9 +472,9 @@ version = "0.4.0" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "4b270d6465eb21ae89b732182c20dc165f8bf9f2" +git-tree-sha1 = "b5278586822443594ff615963b0c09755771b3e0" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.25.0" +version = "3.26.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] @@ -562,9 +562,9 @@ version = "2.4.2" [[deps.ConstructionBase]] deps = ["LinearAlgebra"] -git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" +git-tree-sha1 = "d8a9c0b6ac2d9081bf76324b39c78ca3ce4f0c98" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.5" +version = "1.5.6" weakdeps = ["IntervalSets", "StaticArrays"] [deps.ConstructionBase.extensions] @@ -1050,16 +1050,16 @@ uuid = "61eb1bfa-7361-4325-ad38-22787b887f55" version = "0.26.7" [[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] -git-tree-sha1 = "3e527447a45901ea392fe12120783ad6ec222803" +deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Qt6Wayland_jll", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] +git-tree-sha1 = "629693584cef594c3f6f99e76e7a7ad17e60e8d5" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.73.6" +version = "0.73.7" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "182c478a179b267dd7a741b6f8f4c3e0803795d6" +git-tree-sha1 = "a8863b69c2a0859f2c2c87ebdc4c6712e88bdf0d" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.73.6+0" +version = "0.73.7+0" [[deps.GaussQuadrature]] deps = ["SpecialFunctions"] @@ -2297,6 +2297,24 @@ git-tree-sha1 = "492601870742dcd38f233b23c3ec629628c1d724" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" version = "6.7.1+1" +[[deps.Qt6Declarative_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll", "Qt6ShaderTools_jll"] +git-tree-sha1 = "e5dd466bf2569fe08c91a2cc29c1003f4797ac3b" +uuid = "629bc702-f1f5-5709-abd5-49b8460ea067" +version = "6.7.1+2" + +[[deps.Qt6ShaderTools_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll"] +git-tree-sha1 = "1a180aeced866700d4bebc3120ea1451201f16bc" +uuid = "ce943373-25bb-56aa-8eca-768745ed7b5a" +version = "6.7.1+1" + +[[deps.Qt6Wayland_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll", "Qt6Declarative_jll"] +git-tree-sha1 = "729927532d48cf79f49070341e1d918a65aba6b0" +uuid = "e99dba38-086e-5de3-a5b1-6e4c66e897c3" +version = "6.7.1+1" + [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" @@ -2466,9 +2484,9 @@ version = "3.45.3+0" [[deps.SciMLBase]] deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "7a38aa94aaf425ab68b96f373cd036a204eaf04b" +git-tree-sha1 = "ddb59473b85372c4a71b082e6862503e550fd97c" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.43.0" +version = "2.44.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2556,9 +2574,9 @@ version = "1.1.0" [[deps.SimpleNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "DiffResults", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "58b144f34e44252b2de0acb5a9dbbb7ea5cd75d7" +git-tree-sha1 = "03c21a4c373c7c3aa77611430068badaa073d740" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "1.10.1" +version = "1.11.0" [deps.SimpleNonlinearSolve.extensions] SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" @@ -2857,9 +2875,9 @@ uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" version = "0.5.24" [[deps.TranscodingStreams]] -git-tree-sha1 = "60df3f8126263c0d6b357b9a1017bb94f53e3582" +git-tree-sha1 = "96612ac5365777520c3c5396314c8cf7408f436a" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.11.0" +version = "0.11.1" weakdeps = ["Random", "Test"] [deps.TranscodingStreams.extensions] @@ -3254,9 +3272,9 @@ version = "1.10.3+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +git-tree-sha1 = "490376214c4721cdaca654041f635213c6165cb3" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" +version = "1.3.7+2" [[deps.libzip_jll]] deps = ["Artifacts", "Bzip2_jll", "GnuTLS_jll", "JLLWrappers", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] diff --git a/experiments/ClimaEarth/run_amip.jl b/experiments/ClimaEarth/run_amip.jl index 17c9ae2dea..aeb8b92bb9 100644 --- a/experiments/ClimaEarth/run_amip.jl +++ b/experiments/ClimaEarth/run_amip.jl @@ -118,7 +118,7 @@ atmos_config_object = CA.AtmosConfig(atmos_config_dict) ## read in some parsed command line arguments, required by this script mode_name = config_dict["mode_name"] energy_check = config_dict["energy_check"] -const FT = config_dict["FLOAT_TYPE"] == "Float64" ? Float64 : Float32 +FT = config_dict["FLOAT_TYPE"] == "Float64" ? Float64 : Float32 land_sim_name = "bucket" t_end = Float64(time_to_seconds(config_dict["t_end"])) t_start = 0.0 @@ -625,6 +625,7 @@ cs = Interfacer.CoupledSimulation{FT}( ); Utilities.show_memory_usage(comms_ctx) + #= ## Restart component model states if specified If a restart directory is specified and contains output files from the `checkpoint_cb` callback, the component model states are restarted from those files. The restart directory diff --git a/experiments/ClimaEarth/run_moist_held_suarez.jl b/experiments/ClimaEarth/run_moist_held_suarez.jl index cb0f830e9d..ea6f716370 100644 --- a/experiments/ClimaEarth/run_moist_held_suarez.jl +++ b/experiments/ClimaEarth/run_moist_held_suarez.jl @@ -354,4 +354,4 @@ function solve_coupler!(cs) end ## run the coupled simulation -solve_coupler!(cs); +#solve_coupler!(cs); diff --git a/perf/Manifest.toml b/perf/Manifest.toml index 37615619ae..28b401a3fc 100644 --- a/perf/Manifest.toml +++ b/perf/Manifest.toml @@ -2,7 +2,7 @@ julia_version = "1.10.4" manifest_format = "2.0" -project_hash = "302422306467d2326750e939162edbd82fdbb61b" +project_hash = "c9f4bf3697b7ea6a30d48bb382aa6b79e19cbe91" [[deps.ADTypes]] git-tree-sha1 = "aa4d425271a914d8c4af6ad9fccb6eb3aec662c7" @@ -32,9 +32,9 @@ version = "0.4.5" [[deps.Accessors]] deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] -git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425" +git-tree-sha1 = "f61b15be1d76846c0ce31d3fcfac5380ae53db6a" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.36" +version = "0.1.37" [deps.Accessors.extensions] AccessorsAxisKeysExt = "AxisKeys" @@ -392,9 +392,9 @@ version = "0.7.5" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "4b270d6465eb21ae89b732182c20dc165f8bf9f2" +git-tree-sha1 = "b5278586822443594ff615963b0c09755771b3e0" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.25.0" +version = "3.26.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] @@ -482,9 +482,9 @@ version = "2.4.2" [[deps.ConstructionBase]] deps = ["LinearAlgebra"] -git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" +git-tree-sha1 = "d8a9c0b6ac2d9081bf76324b39c78ca3ce4f0c98" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.5" +version = "1.5.6" weakdeps = ["IntervalSets", "StaticArrays"] [deps.ConstructionBase.extensions] @@ -888,16 +888,16 @@ uuid = "61eb1bfa-7361-4325-ad38-22787b887f55" version = "0.26.7" [[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] -git-tree-sha1 = "3e527447a45901ea392fe12120783ad6ec222803" +deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Qt6Wayland_jll", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] +git-tree-sha1 = "629693584cef594c3f6f99e76e7a7ad17e60e8d5" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.73.6" +version = "0.73.7" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "182c478a179b267dd7a741b6f8f4c3e0803795d6" +git-tree-sha1 = "a8863b69c2a0859f2c2c87ebdc4c6712e88bdf0d" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.73.6+0" +version = "0.73.7+0" [[deps.GaussQuadrature]] deps = ["SpecialFunctions"] @@ -1855,6 +1855,24 @@ git-tree-sha1 = "492601870742dcd38f233b23c3ec629628c1d724" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" version = "6.7.1+1" +[[deps.Qt6Declarative_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll", "Qt6ShaderTools_jll"] +git-tree-sha1 = "e5dd466bf2569fe08c91a2cc29c1003f4797ac3b" +uuid = "629bc702-f1f5-5709-abd5-49b8460ea067" +version = "6.7.1+2" + +[[deps.Qt6ShaderTools_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll"] +git-tree-sha1 = "1a180aeced866700d4bebc3120ea1451201f16bc" +uuid = "ce943373-25bb-56aa-8eca-768745ed7b5a" +version = "6.7.1+1" + +[[deps.Qt6Wayland_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll", "Qt6Declarative_jll"] +git-tree-sha1 = "729927532d48cf79f49070341e1d918a65aba6b0" +uuid = "e99dba38-086e-5de3-a5b1-6e4c66e897c3" +version = "6.7.1+1" + [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" @@ -1990,9 +2008,9 @@ version = "0.6.43" [[deps.SciMLBase]] deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "7a38aa94aaf425ab68b96f373cd036a204eaf04b" +git-tree-sha1 = "ddb59473b85372c4a71b082e6862503e550fd97c" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.43.0" +version = "2.44.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2063,9 +2081,9 @@ version = "1.1.0" [[deps.SimpleNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "DiffResults", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "58b144f34e44252b2de0acb5a9dbbb7ea5cd75d7" +git-tree-sha1 = "03c21a4c373c7c3aa77611430068badaa073d740" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "1.10.1" +version = "1.11.0" [deps.SimpleNonlinearSolve.extensions] SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" @@ -2703,9 +2721,9 @@ version = "1.6.43+1" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +git-tree-sha1 = "490376214c4721cdaca654041f635213c6165cb3" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" +version = "1.3.7+2" [[deps.libzip_jll]] deps = ["Artifacts", "Bzip2_jll", "GnuTLS_jll", "JLLWrappers", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"]