Previous deployment failed, possibly due to permissions issues.

The old Jekyll site is now deployed to https://chaste.github.io/PyChaste.
It probably needs redoing to match the modern Hugo theme on https://chaste.github.io.

It probably needs redoing to match the modern Hugo theme on https://chaste.github.io.

As part of #46, content from the PyChaste website will be moved into chaste.github.io

The PyChaste website is being re-created in markdown directly under chaste.github.io (see PR https://github.com/Chaste/Chaste.github.io/pull/17).

Things to consider for python notebook tutorials:

• Generate markdown from ipynb automatically to keep them in sync.
• Create cron job to periodically check current ipynb against markdown and update markdown manually.

nbconvert can help with the automatic conversion of Jupyter notebooks to markdown.

Generating markdown for the website is fixed in this PR: #50

Python is not specified in the code blocks for some of the generated tutorial markdown, which affects syntax highlighting on the website.

Bad Example

import os
def main:
    print("Code block without 'python'")

https://chaste.github.io/pychaste/tutorials/pottsbasedcellsimulations/

Good Example

import os
def main:
    print("Code block with 'python'")

https://chaste.github.io/pychaste/tutorials/cellsorting/

Resolution
The bad examples are duplicate tutorials that were not overwritten with autogenerated ones. They will be removed.

As part of #46, PyChaste API generation will be moved to Chaste infra.