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Bioformats not finding Python Javabridge? #143

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u2056710 opened this issue Jan 22, 2021 · 0 comments
Open

Bioformats not finding Python Javabridge? #143

u2056710 opened this issue Jan 22, 2021 · 0 comments

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@u2056710
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u2056710 commented Jan 22, 2021

Hi. So I'm new here, will try to post as much info as I can.

I have installed javabridge, using pip intstall python-javabridge. it works, and I know that because i can run
import javabridge javabridge.start_vm()
in python without any errors.

Next, to install python-bioformats, I try pip install python-bioformats, however it returns an error - here is the bit that (I think) is most important:

Running setup.py clean for python-javabridge
Failed to build python-javabridge
Installing collected packages: python-javabridge, boto3, python-bioformats

I think what the issue is is that Python-Bioformats is not finding the right version of python-javabridge? Not sure how to overcome this, but I'm really desperate to get bioformats working!

Thanks in advance for your help!

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