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I'm quite new to Python and very new to Cellprofiler.
I'm getting errors telling me that some modules can't be found ("Crop module" and "CorrectIlluminationApply module", the latest being from my own pipeline).
ERROR:root:Failed to load pipeline
Traceback (most recent call last):
File "C:\Users\albert\AppData\Local\Continuum\miniconda3\envs\cellprofiler\lib\site-packages\cellprofiler\pipeline.py", line 1024, in loadtxt
module = self.instantiate_module(module_name)
File "C:\Users\albert\AppData\Local\Continuum\miniconda3\envs\cellprofiler\lib\site-packages\cellprofiler\pipeline.py", line 672, in instantiate_module
return cellprofiler.modules.instantiate_module(module_name)
File "C:\Users\albert\AppData\Local\Continuum\miniconda3\envs\cellprofiler\lib\site-packages\cellprofiler\modules\__init__.py", line 429, in instantiate_module
module = get_module_class(module_name)()
File "C:\Users\albert\AppData\Local\Continuum\miniconda3\envs\cellprofiler\lib\site-packages\cellprofiler\modules\__init__.py", line 424, in get_module_class
raise ValueError("Could not find the %s module" % module_class)
ValueError: Could not find the CorrectIlluminationApply module
Also, it tells me that the returned variable "workspace" is "referenced before assignment"
---------------------------------------------------------------------------
UnboundLocalError Traceback (most recent call last)
<ipython-input-76-cfb2eda5aa0f> in <module>()
----> 1 workspace = run_pipeline(pipeline_filename, images)
<ipython-input-73-613a46ada7b6> in run_pipeline(pipeline_filename, image_dict)
39 # and the image set/image set list which can be used
40 # to use/view/store/whatever output data.
---> 41 return workspace
UnboundLocalError: local variable 'workspace' referenced before assignment
Thanks in advance and kind regards!
The text was updated successfully, but these errors were encountered:
Hi,
I'm quite new to Python and very new to Cellprofiler.
I'm getting errors telling me that some modules can't be found ("Crop module" and "CorrectIlluminationApply module", the latest being from my own pipeline).
Also, it tells me that the returned variable "workspace" is "referenced before assignment"
Thanks in advance and kind regards!
The text was updated successfully, but these errors were encountered: