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RequeueJobs.py
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RequeueJobs.py
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#!/usr/bin/env ./batchprofiler.sh
#
# Requeue jobs
#
"""
CellProfiler is distributed under the GNU General Public License.
See the accompanying file LICENSE for details.
Copyright (c) 2003-2009 Massachusetts Institute of Technology
Copyright (c) 2009-2015 Broad Institute
All rights reserved.
Please see the AUTHORS file for credits.
Website: http://www.cellprofiler.org
"""
print "Content-Type: text/html\r"
print "\r"
import cgitb
cgitb.enable()
import RunBatch
import bputilities
from bpformdata import *
import cgi
import os
import subprocess
import sys
batch_id = BATCHPROFILER_VARIABLES[BATCH_ID]
if job_id is not None:
bputilities.requeue_job(job_id)
print "Content-Type: text/html"
print"""
<html><head><title>Job %(job_id)d requeued</title></head>
<body>Job %(job_id)d requeued
</body>
</html>
"""%(globals())
else:
print """<html><head><title>Requeue jobs</title></head>
<body>
<h1>Requeue jobs started by the imageweb webserver</h1>
<form action='RequeueJobs.py' method='POST'>
Job ID:<input type='text' name='job_id' />
<input type='submit' value='Kill'/>
</form>
"""
script = """#!/bin/sh
set -v
if [ -e "$HOME/.batchprofiler.sh" ]; then
. "$HOME/.batchprofiler.sh"
fi
set +v
qstat
"""
scriptfile = bputilities.make_temp_script(script)
try:
output = subprocess.check_output([scriptfile])
finally:
os.remove(scriptfile)
result = []
lines = output.split("\n")
header = lines[0]
columns = [i for i in range(len(header))
if i == 0 or (header[i-1].isspace() and not header[i].isspace())]
columns.append(len(header))
rows = [[line[columns[i]:columns[i+1]].strip()
for i in range(len(columns)-1)]
for line in lines]
header = rows[0]
body = rows[2:]
print """
<h2>Jobs on imageweb</h2>
<table>
"""
print "<tr>%s</tr>"%("".join([
'<th>%s</th>'%field for field in header]))
for fields in body:
try:
job_id = int(fields[0])
except:
continue
fields[0] = """
<form action='RequeueJobs.py' method='POST'>
Job ID: %d
<input type='hidden' name='job_id' value='%d'/>
<input type='submit' value='Requeue'/>
</form>""" % (job_id, job_id)
print "<tr><td>%s</td></tr>" % "</td><td>".join(fields)
"""
</table>
</body>
"""
sys.stdout.close()
bputilities.shutdown_cellprofiler()