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Name duplicates in the 2024-12-19 release #887

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Mesibov opened this issue Jan 2, 2025 · 2 comments
Open

Name duplicates in the 2024-12-19 release #887

Mesibov opened this issue Jan 2, 2025 · 2 comments
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@Mesibov
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Mesibov commented Jan 2, 2025

Taxon.tsv in the 2024-12-19 release in CLB has a very large number of duplicate names, i.e. records which differ only in taxonID. These are listed in the attached strict-duplicates.txt.

Most of these arise in the source, for example the pair

https://www.marinespecies.org/ostracoda/aphia.php?p=taxdetails&id=771672 (CLJVD)
https://www.marinespecies.org/ostracoda/aphia.php?p=taxdetails&id=771677 (CNKWW)

The spread of status and rank in individual records is

No. of records | taxonomicStatus | taxonRank
4 | accepted | genus
10 | accepted | subgenus
14 | ambiguous synonym | form
2 | ambiguous synonym | infraspecific name
504 | ambiguous synonym | species
10 | ambiguous synonym | subform
14 | ambiguous synonym | subspecies
16 | ambiguous synonym | variety
14 | misapplied | species
2 | misapplied | subspecies
22 | provisionally accepted | species
16 | synonym | family
2 | synonym | form
475 | synonym | genus
4 | synonym | other
299 | synonym | species
18 | synonym | subfamily
104 | synonym | subgenus
6 | synonym | subspecies
12 | synonym | tribe
2 | synonym | unranked
11 | synonym | variety

and the name with the most duplicates is Rubus ulmifolius, all ambiguous synonyms:

CMQTH
CPGMG
CPGMH
CPGMJ
CPGMK
CPGML
CPGMM
CPGMN
CPGMP
CPGMQ
CPGMR
CPGMT
CPGMV
CPGMX
CPGMY
CPGMZ
CPGN2
CPGN3
CPGN4
CPGN5

strict-duplicates.txt

@Mesibov Mesibov added the feedback User feedback label Jan 2, 2025
@mdoering
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mdoering commented Jan 2, 2025

ambiguous synonym is exactly for those cases when the same name is a synonym for different accepted names, i.e. a pro parte synonym. So these are very much expected to be "duplicates".

@Mesibov
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Mesibov commented Jan 2, 2025

@mdoering, many thanks. That leaves

4 | accepted | genus
10 | accepted | subgenus
14 | misapplied | species
2 | misapplied | subspecies
22 | provisionally accepted | species
16 | synonym | family
2 | synonym | form
475 | synonym | genus
4 | synonym | other
299 | synonym | species
18 | synonym | subfamily
104 | synonym | subgenus
6 | synonym | subspecies
12 | synonym | tribe
2 | synonym | unranked
11 | synonym | variety

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