Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Incompatibility issues with add_peptide_positions() #35

Open
JosieAC opened this issue Nov 12, 2021 · 0 comments
Open

Incompatibility issues with add_peptide_positions() #35

JosieAC opened this issue Nov 12, 2021 · 0 comments

Comments

@JosieAC
Copy link
Collaborator

JosieAC commented Nov 12, 2021

camprotR/R/ptm.R

Line 309 in 6058ca4

master_protein_col = "Master.Protein.Accessions") {

add_peptide_positions() is incompatible if using certain version of PD. This is due to inconsistencies in column names. "Sequences" is sometimes "Annotated.Sequences". Please could a customisable parameter be added as with the add_PTM_positions() ?- e.g.:

add_peptide_positions(obj, proteome_fasta, master_protein_col = "Master.Protein.Accessions", 
    sequence_col = "Sequence")
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@JosieAC