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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(add_PTM_positions)
export(add_peptide_positions)
export(add_site_sequence)
export(append_fasta)
export(center_normalise_to_ref)
export(check_uniprot_release)
export(count_features_per_protein)
export(determine_ancestor_function)
export(determine_offspring_function)
export(download_ccp_crap)
export(estimate_go_overrep)
export(estimate_incorporation)
export(expand_terms)
export(filter_TMT_PSMs)
export(get_all_mappings)
export(get_ancestor_go)
export(get_cat_palette)
export(get_ccp_crap)
export(get_enriched_go)
export(get_incorporation)
export(get_medians)
export(get_notch_per_protein)
export(get_parsimony_pep2prot)
export(get_psm_metrics)
export(get_psm_silac_mod_regex)
export(get_ratio)
export(get_sequence)
export(make_fasta)
export(parse_PTM_scores)
export(parse_features)
export(plot_TMT_notch)
export(plot_below_notch_per_prot)
export(plot_fraction_below_notch_per_prot)
export(plot_go)
export(plot_incorporation)
export(plot_missing_SN)
export(plot_missing_SN_per_sample)
export(plot_quant)
export(psm_to_peptide_style_modifications)
export(remove_dots)
export(remove_redundant_go)
export(remove_silac_modifications)
export(remove_x)
export(restrict_features_per_protein)
export(silac_psm_seq_int)
export(sub_crap)
export(theme_camprot)
export(theme_csd)
export(update_average_sn)
import(dplyr)
import(ggplot2)
import(tidyr)
importFrom(Biobase,"exprs<-")
importFrom(MSnbase,exprs)
importFrom(MSnbase,fData)
importFrom(grDevices,colorRampPalette)
importFrom(purrr,map2)
importFrom(rlang,.data)
importFrom(robustbase,colMedians)
importFrom(stats,setNames)
importFrom(utils,head)