You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
@andrewelamb, adding the argument cohort to a query makes it return no results. Example below:
Before:
#getting ICI data
#datasets that we have in the iAtlas database
ici_datasets <- iatlasGraphQLClient::query_datasets(types = "ici")
#immune features of all samples in the ici datasets
features_df <- iatlasGraphQLClient::query_features(cohorts = ici_datasets$name)
head(features_df)
name
display
class
order
unit
method_tag
B_cells_Aggregate2
B Cells
Immune Cell Proportion - Common Lymphoid and Myeloid Cell Derivative Class
3
Fraction
CIBERSORT
B_cells_Aggregate3
B Cells
Immune Cell Proportion - Differentiated Lymphoid and Myeloid Cell Derivative Class
4
Fraction
CIBERSORT
B_cells_memory
B Cells Memory
Immune Cell Proportion - Original
9
Fraction
CIBERSORT
B_cells_naive
B Cells Naive
Immune Cell Proportion - Original
8
Fraction
CIBERSORT
BIOCARTA_CTLA4_V_Bindea_Th1_Cells
CTLA4 vs Th1
Predictor of Response to Immune Checkpoint Treatment
NA
Fraction
NA
Cytolytic_Score
Cytolytic Score
Predictor of Response to Immune Checkpoint Treatment
NA
Score
NA
Now:
#getting ICI data
ici_datasets <- iatlasGraphQLClient::query_datasets(types = "ici")
features_df <- iatlasGraphQLClient::query_features(cohorts = ici_datasets$name)
# now, this query returns nothing:
head(features_df)
# A tibble: 0 × 6
# ℹ 6 variables: name <chr>, display <chr>, class <chr>, order <int>, unit <chr>, method_tag <chr>
Update: I decided to be more explicit in setting the database version used, and with that I noticed that this issue only happens in the current staging database.
@andrewelamb, adding the argument
cohort
to a query makes it return no results. Example below:Before:
Now:
This was observed for the following queries:
I am using iatlasGraphQLClient_0.2.4 and the live database.
This is only affecting a few notebooks, the web app is working fine - so this is not an urgent issue.
The text was updated successfully, but these errors were encountered: