Energy_Coefficient_Graph.ipynb

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    "import pywt\n",
    "import pandas as pd\n",
    "import numpy as np\n",
    "import math\n",
    "import matplotlib.pyplot as plt\n",
    "from biosppy.signals import ecg\n",
    "\n",
    "from bokeh.io import output_notebook, show\n",
    "from bokeh.layouts import column\n",
    "from bokeh.plotting import figure, show, output_file\n",
    "\n",
    "from sklearn import preprocessing\n",
    "from sklearn.cluster import KMeans\n",
    "from sklearn.decomposition import PCA\n",
    "\n",
    "from waveform_processor import ABPWaveformProcessor"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
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     },
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       "      <th>AR1</th>\n",
       "      <th>I</th>\n",
       "      <th>II</th>\n",
       "      <th>III</th>\n",
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       "      <th>2017-07-06 12:00:00.000000080</th>\n",
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       "      <th>2017-07-06 12:00:00.008333414</th>\n",
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       "      <th>2017-07-06 12:00:00.012500081</th>\n",
       "      <td>96.2</td>\n",
       "      <td>0.081</td>\n",
       "      <td>0.278</td>\n",
       "      <td>0.193</td>\n",
       "      <td>0.224</td>\n",
       "      <td>34.32</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2017-07-06 12:00:00.016666748</th>\n",
       "      <td>103.0</td>\n",
       "      <td>0.093</td>\n",
       "      <td>0.303</td>\n",
       "      <td>0.207</td>\n",
       "      <td>0.244</td>\n",
       "      <td>34.32</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2017-07-06 12:00:00.020833415</th>\n",
       "      <td>110.0</td>\n",
       "      <td>0.105</td>\n",
       "      <td>0.329</td>\n",
       "      <td>0.220</td>\n",
       "      <td>0.259</td>\n",
       "      <td>34.32</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2017-07-06 12:00:00.025000082</th>\n",
       "      <td>114.4</td>\n",
       "      <td>0.117</td>\n",
       "      <td>0.354</td>\n",
       "      <td>0.232</td>\n",
       "      <td>0.271</td>\n",
       "      <td>34.32</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2017-07-06 12:00:00.029166749</th>\n",
       "      <td>118.8</td>\n",
       "      <td>0.132</td>\n",
       "      <td>0.376</td>\n",
       "      <td>0.239</td>\n",
       "      <td>0.283</td>\n",
       "      <td>34.32</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "                                 AR1      I     II    III      V   SPO2\n",
       "2017-07-06 12:00:00.000000080   73.4  0.039  0.181  0.142  0.181  34.32\n",
       "2017-07-06 12:00:00.004166747   80.4  0.054  0.210  0.161  0.195  34.32\n",
       "2017-07-06 12:00:00.008333414   88.2  0.063  0.244  0.173  0.210  34.32\n",
       "2017-07-06 12:00:00.012500081   96.2  0.081  0.278  0.193  0.224  34.32\n",
       "2017-07-06 12:00:00.016666748  103.0  0.093  0.303  0.207  0.244  34.32\n",
       "2017-07-06 12:00:00.020833415  110.0  0.105  0.329  0.220  0.259  34.32\n",
       "2017-07-06 12:00:00.025000082  114.4  0.117  0.354  0.232  0.271  34.32\n",
       "2017-07-06 12:00:00.029166749  118.8  0.132  0.376  0.239  0.283  34.32"
      ]
     },
     "execution_count": 4,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "storeA=pd.HDFStore('abp_data/ABP_A.hd5')\n",
    "storeB=pd.HDFStore('abp_data/ABP_B.hd5')\n",
    "storeC=pd.HDFStore('abp_data/ABP_C.hd5')\n",
    "\n",
    "wavesA=storeA.select('Waveforms')\n",
    "wavesB=storeB.select('Waveforms')\n",
    "wavesC=storeC.select('Waveforms')\n",
    "\n",
    "DATA_TIME_CONST = 0.004166747\n",
    "\n",
    "wavesA.iloc[0:8]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {},
   "outputs": [],
   "source": [
    "# detail_coeffs_list = [[\"cA5\", \"cD5\"],[\"cA4\", \"cD4\"],[\"cA3\", \"cD3\"],[\"cA2\", \"cD2\"],[\"cA1\", \"cD1\"]]\n",
    "\n",
    "# print()\n",
    "# print(math.floor(len(wavesA) / math.ceil(13.5 / DATA_TIME_CONST)))\n",
    "\n",
    "def generateSWTCoeffs(waveform, level=5):\n",
    "#     time_units = math.ceil(window / DATA_TIME_CONST)\n",
    "#     abp_signal_swt = wavesA.iloc[0:3200]['AR1']\n",
    "    db4 = pywt.Wavelet('db4')\n",
    "#     print(pywt.swt(abp_signal_swt, db4, level=5))\n",
    "    return pywt.swt(waveform, db4, level=level)\n",
    "    #return (cA5a, cD5a), (cA4a, cD4a), (cA3a, cD3a), (cA2a, cD2a), (cA1a, cD1a) = pywt.swt(abp__signal_swt, db4, level=5)\n",
    "    \n",
    "def calcEnergy(coeff):\n",
    "    return np.sqrt(np.sum(np.array(coeff ** 2)) / len(coeff))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {},
   "outputs": [],
   "source": [
    "def segmenter(level=5, window_multiplier=1):\n",
    "    section_size = math.ceil(13.5 / DATA_TIME_CONST)\n",
    "    section_size = int((100*2**level / 4)) * window_multiplier\n",
    "    return np.arange(0, len(wavesA), section_size)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "[['cA6', 'cD6'],\n",
       " ['cA5', 'cD5'],\n",
       " ['cA4', 'cD4'],\n",
       " ['cA3', 'cD3'],\n",
       " ['cA2', 'cD2'],\n",
       " ['cA1', 'cD1']]"
      ]
     },
     "execution_count": 7,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "def listCreator(levels):\n",
    "    new_list = []\n",
    "    for i in range(levels, 0, -1):\n",
    "        new_list.append([\"cA{0}\".format(i),\"cD{0}\".format(i)])\n",
    "    return new_list\n",
    "\n",
    "listCreator(6)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "           cA1         cA2         cA3         cA4         cA5       cD1  \\\n",
      "0   105.861738  149.710211  211.671511  298.710771  419.280458  0.170124   \n",
      "1   101.241853  143.164561  202.372722  285.483363  400.607149  1.115184   \n",
      "2   100.223386  141.721902  200.345889  282.687707  396.546182  1.197331   \n",
      "3    95.395780  134.908242  190.747571  269.169308  377.211207  0.374473   \n",
      "4    93.385411  132.063195  186.726047  263.561696  369.818292  0.568694   \n",
      "5    95.197163  134.628611  190.359492  268.664601  376.766208  0.143535   \n",
      "6    94.229575  133.250640  188.385128  265.884836  373.127446  0.938555   \n",
      "7    97.701972  138.165969  195.345445  275.694626  386.813515  0.678833   \n",
      "8    98.960649  139.949915  197.876845  279.241943  391.531696  0.355638   \n",
      "9    99.811699  141.152627  199.579407  281.714594  395.578594  0.463468   \n",
      "10  102.864485  145.471698  205.684041  290.263495  407.320940  0.170432   \n",
      "11  101.588050  143.666485  203.135732  286.733652  402.701153  0.198004   \n",
      "12  100.411500  142.002700  200.778910  283.329909  397.356665  0.157392   \n",
      "13   96.211333  136.062804  192.385654  271.549535  381.129757  0.157330   \n",
      "14   96.027596  135.802754  192.015973  270.962537  380.008684  0.203256   \n",
      "15   95.794649  135.469163  191.535605  270.265187  378.786794  0.667127   \n",
      "16   97.084832  137.292467  194.114165  273.992419  384.600782  0.758610   \n",
      "\n",
      "         cD2       cD3        cD4        cD5  \n",
      "0   0.517488  4.633158  19.532844  51.576614  \n",
      "1   1.932329  6.120831  20.216004  50.153897  \n",
      "2   2.087331  5.632021  19.094781  50.752390  \n",
      "3   0.689796  3.978914  17.808852  51.146237  \n",
      "4   0.991210  3.841670  16.384917  46.518446  \n",
      "5   0.370007  3.604107  17.111538  49.077078  \n",
      "6   1.640893  4.744442  16.827562  46.533871  \n",
      "7   1.231054  4.452801  17.668014  48.891286  \n",
      "8   0.664404  4.088031  18.287392  51.527238  \n",
      "9   0.828417  4.023493  17.342643  47.368767  \n",
      "10  0.435506  4.255000  18.946051  50.945509  \n",
      "11  0.452580  3.999029  17.665332  47.583153  \n",
      "12  0.414556  4.166863  18.668265  51.568947  \n",
      "13  0.392887  3.732762  16.891716  47.099976  \n",
      "14  0.458649  3.826526  17.876555  49.343615  \n",
      "15  1.155604  4.230874  18.124687  51.059842  \n",
      "16  1.306719  4.258395  16.993308  47.179760  \n"
     ]
    }
   ],
   "source": [
    "def processWaveform(waveform, level, window_multiplier):\n",
    "    energy = {}\n",
    "\n",
    "    for label in listCreator(level):\n",
    "        energy[label[0]] = []\n",
    "        energy[label[1]] = []\n",
    "\n",
    "    segments = segmenter(level, window_multiplier)\n",
    "\n",
    "    for i in range(1, len(segments)):\n",
    "        #signal1 = waveform.head(3200)['AR1']\n",
    "        signal = waveform.iloc[segments[i-1]:segments[i]]['AR1']\n",
    "\n",
    "        for coeff, label in zip(generateSWTCoeffs(signal, level), listCreator(level)):\n",
    "            for single_coeff, single_label in zip(coeff, label):\n",
    "                nrgCoeff = calcEnergy(single_coeff)\n",
    "                energy[single_label].append(nrgCoeff)\n",
    "\n",
    "    return pd.DataFrame(data=energy)\n",
    "\n",
    "print(processWaveform(wavesA, 5, 1))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
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   "execution_count": 26,
   "metadata": {},
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       "  var render_items = [{\"docid\":\"1cddc58a-2a40-4515-9982-3d68eef2da76\",\"elementid\":\"a97de7a1-a7b6-4229-b49b-1ad730183b8b\",\"modelid\":\"216d1b7e-ea18-438f-8587-ff5eff14b6df\",\"notebook_comms_target\":\"74e69637-52f4-4e61-bbab-7ad5211f311e\"}];\n",
       "  root.Bokeh.embed.embed_items_notebook(docs_json, render_items);\n",
       "\n",
       "  }\n",
       "  if (root.Bokeh !== undefined) {\n",
       "    embed_document(root);\n",
       "  } else {\n",
       "    var attempts = 0;\n",
       "    var timer = setInterval(function(root) {\n",
       "      if (root.Bokeh !== undefined) {\n",
       "        embed_document(root);\n",
       "        clearInterval(timer);\n",
       "      }\n",
       "      attempts++;\n",
       "      if (attempts > 100) {\n",
       "        console.log(\"Bokeh: ERROR: Unable to run BokehJS code because BokehJS library is missing\")\n",
       "        clearInterval(timer);\n",
       "      }\n",
       "    }, 10, root)\n",
       "  }\n",
       "})(window);"
      ],
      "application/vnd.bokehjs_exec.v0+json": ""
     },
     "metadata": {
      "application/vnd.bokehjs_exec.v0+json": {
       "id": "216d1b7e-ea18-438f-8587-ff5eff14b6df"
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     "output_type": "display_data"
    },
    {
     "data": {
      "text/html": [
       "<p><code>&lt;Bokeh Notebook handle for <strong>In[22]</strong>&gt;</code></p>"
      ],
      "text/plain": [
       "<bokeh.io.notebook.CommsHandle at 0x1c1bbe4d30>"
      ]
     },
     "execution_count": 26,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "waveform_processor = ABPWaveformProcessor()\n",
    "\n",
    "colors = [\"red\", \"olive\", \"darkred\", \"goldenrod\", \"skyblue\", \"orange\", \"salmon\"]\n",
    "\n",
    "p1 = figure(plot_width=600, plot_height=300, title=\"Detail Number vs Energy Coefficients\")\n",
    "p2 = figure(plot_width=600, plot_height=300, title=\"Average Number vs Energy Coefficients with Jitter\")\n",
    "\n",
    "df = waveform_processor.processWaveform(wavesA, 6, 1)\n",
    "\n",
    "for i, coeffs in enumerate(df):\n",
    "    for value in df[coeffs]:\n",
    "        y = value\n",
    "        color = colors[i % len(colors)]\n",
    "        \n",
    "        if \"cD\" in coeffs: \n",
    "            p1.circle(x=i, y=y, color=color)\n",
    "        else:\n",
    "            p2.circle(x=i, y=y, color=color)\n",
    "            #{'value': i, 'transform': Jitter(width=1)}\n",
    "\n",
    "# output_file(\"jitter.html\")\n",
    "print(column(p1,p2).references)\n",
    "show(column(p1,p2), notebook_handle=True)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 23,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "\n",
       "<div class=\"bk-root\">\n",
       "    <div class=\"bk-plotdiv\" id=\"cb4c6842-bf18-4c56-87ac-b0c4b98e698d\"></div>\n",
       "</div>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "data": {
      "application/javascript": [
       "(function(root) {\n",
       "  function embed_document(root) {\n",
       "    \n",
       "  var docs_json = 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Application\",\"version\":\"0.12.14\"}};\n",
       "  var render_items = [{\"docid\":\"373cba15-7b95-4dee-a04b-4fc028f4eb10\",\"elementid\":\"cb4c6842-bf18-4c56-87ac-b0c4b98e698d\",\"modelid\":\"43080f25-ba4e-4c63-9122-7edd79bd6506\",\"notebook_comms_target\":\"517bdf4c-8542-43b7-b3f9-b1ab9c089d9f\"}];\n",
       "  root.Bokeh.embed.embed_items_notebook(docs_json, render_items);\n",
       "\n",
       "  }\n",
       "  if (root.Bokeh !== undefined) {\n",
       "    embed_document(root);\n",
       "  } else {\n",
       "    var attempts = 0;\n",
       "    var timer = setInterval(function(root) {\n",
       "      if (root.Bokeh !== undefined) {\n",
       "        embed_document(root);\n",
       "        clearInterval(timer);\n",
       "      }\n",
       "      attempts++;\n",
       "      if (attempts > 100) {\n",
       "        console.log(\"Bokeh: ERROR: Unable to run BokehJS code because BokehJS library is missing\")\n",
       "        clearInterval(timer);\n",
       "      }\n",
       "    }, 10, root)\n",
       "  }\n",
       "})(window);"
      ],
      "application/vnd.bokehjs_exec.v0+json": ""
     },
     "metadata": {
      "application/vnd.bokehjs_exec.v0+json": {
       "id": "43080f25-ba4e-4c63-9122-7edd79bd6506"
      }
     },
     "output_type": "display_data"
    },
    {
     "data": {
      "text/html": [
       "<p><code>&lt;Bokeh Notebook handle for <strong>In[22]</strong>&gt;</code></p>"
      ],
      "text/plain": [
       "<bokeh.io.notebook.CommsHandle at 0x1c1fc0c940>"
      ]
     },
     "execution_count": 23,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "waveform_processor = ABPWaveformProcessor()\n",
    "\n",
    "colors = [\"red\", \"olive\", \"darkred\", \"goldenrod\", \"skyblue\", \"orange\", \"salmon\"]\n",
    "\n",
    "p1 = figure(plot_width=600, plot_height=300, title=\"Detail Number vs Energy Coefficients\")\n",
    "p2 = figure(plot_width=600, plot_height=300, title=\"Average Number vs Energy Coefficients with Jitter\")\n",
    "\n",
    "df = waveform_processor.processWaveform(wavesB, 6, 1)\n",
    "\n",
    "for i, coeffs in enumerate(df):\n",
    "    for value in df[coeffs]:\n",
    "        y = value\n",
    "        color = colors[i % len(colors)]\n",
    "        \n",
    "        if \"cD\" in coeffs: \n",
    "            p1.circle(x=i, y=y, color=color)\n",
    "        else:\n",
    "            p2.circle(x=i, y=y, color=color)\n",
    "            #{'value': i, 'transform': Jitter(width=1)}\n",
    "\n",
    "# output_file(\"jitter.html\")\n",
    "\n",
    "show(column(p1,p2), notebook_handle=True)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "\n",
       "<div class=\"bk-root\">\n",
       "    <div class=\"bk-plotdiv\" id=\"0f08fc37-add3-421e-8928-685009b20a49\"></div>\n",
       "</div>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
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    {
     "data": {
      "application/javascript": [
       "(function(root) {\n",
       "  function embed_document(root) {\n",
       "    \n",
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Application\",\"version\":\"0.12.14\"}};\n",
       "  var render_items = [{\"docid\":\"e18d2ca5-eee8-446d-8712-647d8364491b\",\"elementid\":\"0f08fc37-add3-421e-8928-685009b20a49\",\"modelid\":\"ea02d251-2843-4973-ad8f-53bdf5303917\",\"notebook_comms_target\":\"d23e7379-b89b-4ae9-8d04-626575ceb880\"}];\n",
       "  root.Bokeh.embed.embed_items_notebook(docs_json, render_items);\n",
       "\n",
       "  }\n",
       "  if (root.Bokeh !== undefined) {\n",
       "    embed_document(root);\n",
       "  } else {\n",
       "    var attempts = 0;\n",
       "    var timer = setInterval(function(root) {\n",
       "      if (root.Bokeh !== undefined) {\n",
       "        embed_document(root);\n",
       "        clearInterval(timer);\n",
       "      }\n",
       "      attempts++;\n",
       "      if (attempts > 100) {\n",
       "        console.log(\"Bokeh: ERROR: Unable to run BokehJS code because BokehJS library is missing\")\n",
       "        clearInterval(timer);\n",
       "      }\n",
       "    }, 10, root)\n",
       "  }\n",
       "})(window);"
      ],
      "application/vnd.bokehjs_exec.v0+json": ""
     },
     "metadata": {
      "application/vnd.bokehjs_exec.v0+json": {
       "id": "ea02d251-2843-4973-ad8f-53bdf5303917"
      }
     },
     "output_type": "display_data"
    },
    {
     "data": {
      "text/html": [
       "<p><code>&lt;Bokeh Notebook handle for <strong>In[8]</strong>&gt;</code></p>"
      ],
      "text/plain": [
       "<bokeh.io.notebook.CommsHandle at 0x1c1c3c4e10>"
      ]
     },
     "execution_count": 11,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "waveform_processor = ABPWaveformProcessor()\n",
    "\n",
    "colors = [\"red\", \"olive\", \"darkred\", \"goldenrod\", \"skyblue\", \"orange\", \"salmon\"]\n",
    "\n",
    "p1 = figure(plot_width=600, plot_height=300, title=\"Detail Number vs Energy Coefficients\")\n",
    "p2 = figure(plot_width=600, plot_height=300, title=\"Average Number vs Energy Coefficients with Jitter\")\n",
    "\n",
    "df = waveform_processor.processWaveform(wavesC, 6, 1)\n",
    "\n",
    "for i, coeffs in enumerate(df):\n",
    "    for value in df[coeffs]:\n",
    "        y = value\n",
    "        color = colors[i % len(colors)]\n",
    "        \n",
    "        if \"cD\" in coeffs: \n",
    "            p1.circle(x=i, y=y, color=color)\n",
    "        else:\n",
    "            p2.circle(x=i, y=y, color=color)\n",
    "            #{'value': i, 'transform': Jitter(width=1)}\n",
    "\n",
    "# output_file(\"jitter.html\")\n",
    "\n",
    "show(column(p1,p2), notebook_handle=True)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 12,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "          cA1         cA2         cA3         cA4         cA5         cA6  \\\n",
      "0  100.752676  142.484956  201.459640  284.290463  398.923128  556.986799   \n",
      "1   95.144252  134.553523  190.253801  268.537826  376.672884  525.411728   \n",
      "2  100.818034  142.577592  201.595441  284.529431  399.336816  557.863368   \n",
      "3   97.129984  137.360669  194.215564  274.085009  384.244733  536.398330   \n",
      "\n",
      "          cA7       cD1       cD2       cD3        cD4        cD5        cD6  \\\n",
      "0  780.959498  0.188553  0.490554  4.235399  18.732478  50.024722  89.694089   \n",
      "1  736.581083  0.220339  0.454508  3.576686  16.746746  48.401096  87.792020   \n",
      "2  782.720567  0.176797  0.426808  4.002206  18.012414  49.437850  87.910460   \n",
      "3  752.346374  0.388746  0.717021  4.027616  17.798269  51.001661  86.976211   \n",
      "\n",
      "          cD7  \n",
      "0  102.814645  \n",
      "1   97.792008  \n",
      "2   98.851339  \n",
      "3   97.063226  \n",
      "         cA1         cA2         cA3         cA4         cA5         cA6  \\\n",
      "0  97.185008  137.439925  194.354428  274.391162  383.471674  537.396797   \n",
      "1  96.213368  136.065837  192.412306  271.669939  379.796432  532.364650   \n",
      "2  99.367580  140.524545  198.710536  280.542840  392.244690  550.001933   \n",
      "3  99.330709  140.473872  198.643897  280.451786  391.692091  549.112208   \n",
      "\n",
      "          cA7       cD1       cD2       cD3        cD4        cD5        cD6  \\\n",
      "0  756.804174  0.194464  0.344323  2.412899  16.024275  59.417966  72.840461   \n",
      "1  750.393995  0.194276  0.335238  2.308297  15.505976  57.998121  71.263863   \n",
      "2  775.179090  0.477128  0.827104  2.901466  16.354485  59.604305  72.178022   \n",
      "3  774.174100  0.303418  0.520364  2.533674  16.296983  62.319452  72.946363   \n",
      "\n",
      "         cD7  \n",
      "0  69.556292  \n",
      "1  61.099047  \n",
      "2  64.043986  \n",
      "3  60.851429  \n",
      "         cA1         cA2         cA3         cA4         cA5         cA6  \\\n",
      "0  81.990877  115.950762  163.967020  231.681670  325.204439  457.030741   \n",
      "1  80.290607  113.547922  160.573971  226.915385  318.706710  447.605136   \n",
      "2  82.092400  116.096018  164.176047  231.981809  325.597304  457.027086   \n",
      "3  83.529974  118.129023  167.051379  236.052054  331.361266  465.014471   \n",
      "\n",
      "          cA7       cD1       cD2       cD3       cD4        cD5        cD6  \\\n",
      "0  644.795988  0.385014  0.654756  1.993664  9.693883  39.935764  51.368825   \n",
      "1  631.498131  0.088019  0.180624  1.503571  8.798207  37.512890  52.892122   \n",
      "2  644.479258  0.088331  0.197352  1.672277  9.591086  40.218343  56.155597   \n",
      "3  656.109484  0.104674  0.217156  1.663997  9.578858  40.507476  57.983778   \n",
      "\n",
      "         cD7  \n",
      "0  44.635523  \n",
      "1  43.712991  \n",
      "2  48.928520  \n",
      "3  44.690738  \n"
     ]
    },
    {
     "data": {
      "text/html": [
       "\n",
       "    <div class=\"bk-root\">\n",
       "        <a href=\"https://bokeh.pydata.org\" target=\"_blank\" class=\"bk-logo bk-logo-small bk-logo-notebook\"></a>\n",
       "        <span id=\"3f558812-3700-46f0-bdf3-151f3e36d121\">Loading BokehJS ...</span>\n",
       "    </div>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "data": {
      "application/javascript": [
       "\n",
       "(function(root) {\n",
       "  function now() {\n",
       "    return new Date();\n",
       "  }\n",
       "\n",
       "  var force = true;\n",
       "\n",
       "  if (typeof (root._bokeh_onload_callbacks) === \"undefined\" || force === true) {\n",
       "    root._bokeh_onload_callbacks = [];\n",
       "    root._bokeh_is_loading = undefined;\n",
       "  }\n",
       "\n",
       "  var JS_MIME_TYPE = 'application/javascript';\n",
       "  var HTML_MIME_TYPE = 'text/html';\n",
       "  var EXEC_MIME_TYPE = 'application/vnd.bokehjs_exec.v0+json';\n",
       "  var CLASS_NAME = 'output_bokeh rendered_html';\n",
       "\n",
       "  /**\n",
       "   * Render data to the DOM node\n",
       "   */\n",
       "  function render(props, node) {\n",
       "    var script = document.createElement(\"script\");\n",
       "    node.appendChild(script);\n",
       "  }\n",
       "\n",
       "  /**\n",
       "   * Handle when an output is cleared or removed\n",
       "   */\n",
       "  function handleClearOutput(event, handle) {\n",
       "    var cell = handle.cell;\n",
       "\n",
       "    var id = cell.output_area._bokeh_element_id;\n",
       "    var server_id = cell.output_area._bokeh_server_id;\n",
       "    // Clean up Bokeh references\n",
       "    if (id !== undefined) {\n",
       "      Bokeh.index[id].model.document.clear();\n",
       "      delete Bokeh.index[id];\n",
       "    }\n",
       "\n",
       "    if (server_id !== undefined) {\n",
       "      // Clean up Bokeh references\n",
       "      var cmd = \"from bokeh.io.state import curstate; print(curstate().uuid_to_server['\" + server_id + \"'].get_sessions()[0].document.roots[0]._id)\";\n",
       "      cell.notebook.kernel.execute(cmd, {\n",
       "        iopub: {\n",
       "          output: function(msg) {\n",
       "            var element_id = msg.content.text.trim();\n",
       "            Bokeh.index[element_id].model.document.clear();\n",
       "            delete Bokeh.index[element_id];\n",
       "          }\n",
       "        }\n",
       "      });\n",
       "      // Destroy server and session\n",
       "      var cmd = \"import bokeh.io.notebook as ion; ion.destroy_server('\" + server_id + \"')\";\n",
       "      cell.notebook.kernel.execute(cmd);\n",
       "    }\n",
       "  }\n",
       "\n",
       "  /**\n",
       "   * Handle when a new output is added\n",
       "   */\n",
       "  function handleAddOutput(event, handle) {\n",
       "    var output_area = handle.output_area;\n",
       "    var output = handle.output;\n",
       "\n",
       "    // limit handleAddOutput to display_data with EXEC_MIME_TYPE content only\n",
       "    if ((output.output_type != \"display_data\") || (!output.data.hasOwnProperty(EXEC_MIME_TYPE))) {\n",
       "      return\n",
       "    }\n",
       "\n",
       "    var toinsert = output_area.element.find(\".\" + CLASS_NAME.split(' ')[0]);\n",
       "\n",
       "    if (output.metadata[EXEC_MIME_TYPE][\"id\"] !== undefined) {\n",
       "      toinsert[0].firstChild.textContent = output.data[JS_MIME_TYPE];\n",
       "      // store reference to embed id on output_area\n",
       "      output_area._bokeh_element_id = output.metadata[EXEC_MIME_TYPE][\"id\"];\n",
       "    }\n",
       "    if (output.metadata[EXEC_MIME_TYPE][\"server_id\"] !== undefined) {\n",
       "      var bk_div = document.createElement(\"div\");\n",
       "      bk_div.innerHTML = output.data[HTML_MIME_TYPE];\n",
       "      var script_attrs = bk_div.children[0].attributes;\n",
       "      for (var i = 0; i < script_attrs.length; i++) {\n",
       "        toinsert[0].firstChild.setAttribute(script_attrs[i].name, script_attrs[i].value);\n",
       "      }\n",
       "      // store reference to server id on output_area\n",
       "      output_area._bokeh_server_id = output.metadata[EXEC_MIME_TYPE][\"server_id\"];\n",
       "    }\n",
       "  }\n",
       "\n",
       "  function register_renderer(events, OutputArea) {\n",
       "\n",
       "    function append_mime(data, metadata, element) {\n",
       "      // create a DOM node to render to\n",
       "      var toinsert = this.create_output_subarea(\n",
       "        metadata,\n",
       "        CLASS_NAME,\n",
       "        EXEC_MIME_TYPE\n",
       "      );\n",
       "      this.keyboard_manager.register_events(toinsert);\n",
       "      // Render to node\n",
       "      var props = {data: data, metadata: metadata[EXEC_MIME_TYPE]};\n",
       "      render(props, toinsert[0]);\n",
       "      element.append(toinsert);\n",
       "      return toinsert\n",
       "    }\n",
       "\n",
       "    /* Handle when an output is cleared or removed */\n",
       "    events.on('clear_output.CodeCell', handleClearOutput);\n",
       "    events.on('delete.Cell', handleClearOutput);\n",
       "\n",
       "    /* Handle when a new output is added */\n",
       "    events.on('output_added.OutputArea', handleAddOutput);\n",
       "\n",
       "    /**\n",
       "     * Register the mime type and append_mime function with output_area\n",
       "     */\n",
       "    OutputArea.prototype.register_mime_type(EXEC_MIME_TYPE, append_mime, {\n",
       "      /* Is output safe? */\n",
       "      safe: true,\n",
       "      /* Index of renderer in `output_area.display_order` */\n",
       "      index: 0\n",
       "    });\n",
       "  }\n",
       "\n",
       "  // register the mime type if in Jupyter Notebook environment and previously unregistered\n",
       "  if (root.Jupyter !== undefined) {\n",
       "    var events = require('base/js/events');\n",
       "    var OutputArea = require('notebook/js/outputarea').OutputArea;\n",
       "\n",
       "    if (OutputArea.prototype.mime_types().indexOf(EXEC_MIME_TYPE) == -1) {\n",
       "      register_renderer(events, OutputArea);\n",
       "    }\n",
       "  }\n",
       "\n",
       "  \n",
       "  if (typeof (root._bokeh_timeout) === \"undefined\" || force === true) {\n",
       "    root._bokeh_timeout = Date.now() + 5000;\n",
       "    root._bokeh_failed_load = false;\n",
       "  }\n",
       "\n",
       "  var NB_LOAD_WARNING = {'data': {'text/html':\n",
       "     \"<div style='background-color: #fdd'>\\n\"+\n",
       "     \"<p>\\n\"+\n",
       "     \"BokehJS does not appear to have successfully loaded. If loading BokehJS from CDN, this \\n\"+\n",
       "     \"may be due to a slow or bad network connection. Possible fixes:\\n\"+\n",
       "     \"</p>\\n\"+\n",
       "     \"<ul>\\n\"+\n",
       "     \"<li>re-rerun `output_notebook()` to attempt to load from CDN again, or</li>\\n\"+\n",
       "     \"<li>use INLINE resources instead, as so:</li>\\n\"+\n",
       "     \"</ul>\\n\"+\n",
       "     \"<code>\\n\"+\n",
       "     \"from bokeh.resources import INLINE\\n\"+\n",
       "     \"output_notebook(resources=INLINE)\\n\"+\n",
       "     \"</code>\\n\"+\n",
       "     \"</div>\"}};\n",
       "\n",
       "  function display_loaded() {\n",
       "    var el = document.getElementById(\"3f558812-3700-46f0-bdf3-151f3e36d121\");\n",
       "    if (el != null) {\n",
       "      el.textContent = \"BokehJS is loading...\";\n",
       "    }\n",
       "    if (root.Bokeh !== undefined) {\n",
       "      if (el != null) {\n",
       "        el.textContent = \"BokehJS \" + root.Bokeh.version + \" successfully loaded.\";\n",
       "      }\n",
       "    } else if (Date.now() < root._bokeh_timeout) {\n",
       "      setTimeout(display_loaded, 100)\n",
       "    }\n",
       "  }\n",
       "\n",
       "\n",
       "  function run_callbacks() {\n",
       "    try {\n",
       "      root._bokeh_onload_callbacks.forEach(function(callback) { callback() });\n",
       "    }\n",
       "    finally {\n",
       "      delete root._bokeh_onload_callbacks\n",
       "    }\n",
       "    console.info(\"Bokeh: all callbacks have finished\");\n",
       "  }\n",
       "\n",
       "  function load_libs(js_urls, callback) {\n",
       "    root._bokeh_onload_callbacks.push(callback);\n",
       "    if (root._bokeh_is_loading > 0) {\n",
       "      console.log(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n",
       "      return null;\n",
       "    }\n",
       "    if (js_urls == null || js_urls.length === 0) {\n",
       "      run_callbacks();\n",
       "      return null;\n",
       "    }\n",
       "    console.log(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n",
       "    root._bokeh_is_loading = js_urls.length;\n",
       "    for (var i = 0; i < js_urls.length; i++) {\n",
       "      var url = js_urls[i];\n",
       "      var s = document.createElement('script');\n",
       "      s.src = url;\n",
       "      s.async = false;\n",
       "      s.onreadystatechange = s.onload = function() {\n",
       "        root._bokeh_is_loading--;\n",
       "        if (root._bokeh_is_loading === 0) {\n",
       "          console.log(\"Bokeh: all BokehJS libraries loaded\");\n",
       "          run_callbacks()\n",
       "        }\n",
       "      };\n",
       "      s.onerror = function() {\n",
       "        console.warn(\"failed to load library \" + url);\n",
       "      };\n",
       "      console.log(\"Bokeh: injecting script tag for BokehJS library: \", url);\n",
       "      document.getElementsByTagName(\"head\")[0].appendChild(s);\n",
       "    }\n",
       "  };var element = document.getElementById(\"3f558812-3700-46f0-bdf3-151f3e36d121\");\n",
       "  if (element == null) {\n",
       "    console.log(\"Bokeh: ERROR: autoload.js configured with elementid '3f558812-3700-46f0-bdf3-151f3e36d121' but no matching script tag was found. \")\n",
       "    return false;\n",
       "  }\n",
       "\n",
       "  var js_urls = [\"https://cdn.pydata.org/bokeh/release/bokeh-0.12.14.min.js\", \"https://cdn.pydata.org/bokeh/release/bokeh-widgets-0.12.14.min.js\", \"https://cdn.pydata.org/bokeh/release/bokeh-tables-0.12.14.min.js\", \"https://cdn.pydata.org/bokeh/release/bokeh-gl-0.12.14.min.js\"];\n",
       "\n",
       "  var inline_js = [\n",
       "    function(Bokeh) {\n",
       "      Bokeh.set_log_level(\"info\");\n",
       "    },\n",
       "    \n",
       "    function(Bokeh) {\n",
       "      \n",
       "    },\n",
       "    function(Bokeh) {\n",
       "      console.log(\"Bokeh: injecting CSS: https://cdn.pydata.org/bokeh/release/bokeh-0.12.14.min.css\");\n",
       "      Bokeh.embed.inject_css(\"https://cdn.pydata.org/bokeh/release/bokeh-0.12.14.min.css\");\n",
       "      console.log(\"Bokeh: injecting CSS: https://cdn.pydata.org/bokeh/release/bokeh-widgets-0.12.14.min.css\");\n",
       "      Bokeh.embed.inject_css(\"https://cdn.pydata.org/bokeh/release/bokeh-widgets-0.12.14.min.css\");\n",
       "      console.log(\"Bokeh: injecting CSS: https://cdn.pydata.org/bokeh/release/bokeh-tables-0.12.14.min.css\");\n",
       "      Bokeh.embed.inject_css(\"https://cdn.pydata.org/bokeh/release/bokeh-tables-0.12.14.min.css\");\n",
       "    }\n",
       "  ];\n",
       "\n",
       "  function run_inline_js() {\n",
       "    \n",
       "    if ((root.Bokeh !== undefined) || (force === true)) {\n",
       "      for (var i = 0; i < inline_js.length; i++) {\n",
       "        inline_js[i].call(root, root.Bokeh);\n",
       "      }if (force === true) {\n",
       "        display_loaded();\n",
       "      }} else if (Date.now() < root._bokeh_timeout) {\n",
       "      setTimeout(run_inline_js, 100);\n",
       "    } else if (!root._bokeh_failed_load) {\n",
       "      console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n",
       "      root._bokeh_failed_load = true;\n",
       "    } else if (force !== true) {\n",
       "      var cell = $(document.getElementById(\"3f558812-3700-46f0-bdf3-151f3e36d121\")).parents('.cell').data().cell;\n",
       "      cell.output_area.append_execute_result(NB_LOAD_WARNING)\n",
       "    }\n",
       "\n",
       "  }\n",
       "\n",
       "  if (root._bokeh_is_loading === 0) {\n",
       "    console.log(\"Bokeh: BokehJS loaded, going straight to plotting\");\n",
       "    run_inline_js();\n",
       "  } else {\n",
       "    load_libs(js_urls, function() {\n",
       "      console.log(\"Bokeh: BokehJS plotting callback run at\", now());\n",
       "      run_inline_js();\n",
       "    });\n",
       "  }\n",
       "}(window));"
      ],
      "application/vnd.bokehjs_load.v0+json": "\n(function(root) {\n  function now() {\n    return new Date();\n  }\n\n  var force = true;\n\n  if (typeof (root._bokeh_onload_callbacks) === \"undefined\" || force === true) {\n    root._bokeh_onload_callbacks = [];\n    root._bokeh_is_loading = undefined;\n  }\n\n  \n\n  \n  if (typeof (root._bokeh_timeout) === \"undefined\" || force === true) {\n    root._bokeh_timeout = Date.now() + 5000;\n    root._bokeh_failed_load = false;\n  }\n\n  var NB_LOAD_WARNING = {'data': {'text/html':\n     \"<div style='background-color: #fdd'>\\n\"+\n     \"<p>\\n\"+\n     \"BokehJS does not appear to have successfully loaded. If loading BokehJS from CDN, this \\n\"+\n     \"may be due to a slow or bad network connection. Possible fixes:\\n\"+\n     \"</p>\\n\"+\n     \"<ul>\\n\"+\n     \"<li>re-rerun `output_notebook()` to attempt to load from CDN again, or</li>\\n\"+\n     \"<li>use INLINE resources instead, as so:</li>\\n\"+\n     \"</ul>\\n\"+\n     \"<code>\\n\"+\n     \"from bokeh.resources import INLINE\\n\"+\n     \"output_notebook(resources=INLINE)\\n\"+\n     \"</code>\\n\"+\n     \"</div>\"}};\n\n  function display_loaded() {\n    var el = document.getElementById(\"3f558812-3700-46f0-bdf3-151f3e36d121\");\n    if (el != null) {\n      el.textContent = \"BokehJS is loading...\";\n    }\n    if (root.Bokeh !== undefined) {\n      if (el != null) {\n        el.textContent = \"BokehJS \" + root.Bokeh.version + \" successfully loaded.\";\n      }\n    } else if (Date.now() < root._bokeh_timeout) {\n      setTimeout(display_loaded, 100)\n    }\n  }\n\n\n  function run_callbacks() {\n    try {\n      root._bokeh_onload_callbacks.forEach(function(callback) { callback() });\n    }\n    finally {\n      delete root._bokeh_onload_callbacks\n    }\n    console.info(\"Bokeh: all callbacks have finished\");\n  }\n\n  function load_libs(js_urls, callback) {\n    root._bokeh_onload_callbacks.push(callback);\n    if (root._bokeh_is_loading > 0) {\n      console.log(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n      return null;\n    }\n    if (js_urls == null || js_urls.length === 0) {\n      run_callbacks();\n      return null;\n    }\n    console.log(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n    root._bokeh_is_loading = js_urls.length;\n    for (var i = 0; i < js_urls.length; i++) {\n      var url = js_urls[i];\n      var s = document.createElement('script');\n      s.src = url;\n      s.async = false;\n      s.onreadystatechange = s.onload = function() {\n        root._bokeh_is_loading--;\n        if (root._bokeh_is_loading === 0) {\n          console.log(\"Bokeh: all BokehJS libraries loaded\");\n          run_callbacks()\n        }\n      };\n      s.onerror = function() {\n        console.warn(\"failed to load library \" + url);\n      };\n      console.log(\"Bokeh: injecting script tag for BokehJS library: \", url);\n      document.getElementsByTagName(\"head\")[0].appendChild(s);\n    }\n  };var element = document.getElementById(\"3f558812-3700-46f0-bdf3-151f3e36d121\");\n  if (element == null) {\n    console.log(\"Bokeh: ERROR: autoload.js configured with elementid '3f558812-3700-46f0-bdf3-151f3e36d121' but no matching script tag was found. \")\n    return false;\n  }\n\n  var js_urls = [\"https://cdn.pydata.org/bokeh/release/bokeh-0.12.14.min.js\", \"https://cdn.pydata.org/bokeh/release/bokeh-widgets-0.12.14.min.js\", \"https://cdn.pydata.org/bokeh/release/bokeh-tables-0.12.14.min.js\", \"https://cdn.pydata.org/bokeh/release/bokeh-gl-0.12.14.min.js\"];\n\n  var inline_js = [\n    function(Bokeh) {\n      Bokeh.set_log_level(\"info\");\n    },\n    \n    function(Bokeh) {\n      \n    },\n    function(Bokeh) {\n      console.log(\"Bokeh: injecting CSS: https://cdn.pydata.org/bokeh/release/bokeh-0.12.14.min.css\");\n      Bokeh.embed.inject_css(\"https://cdn.pydata.org/bokeh/release/bokeh-0.12.14.min.css\");\n      console.log(\"Bokeh: injecting CSS: https://cdn.pydata.org/bokeh/release/bokeh-widgets-0.12.14.min.css\");\n      Bokeh.embed.inject_css(\"https://cdn.pydata.org/bokeh/release/bokeh-widgets-0.12.14.min.css\");\n      console.log(\"Bokeh: injecting CSS: https://cdn.pydata.org/bokeh/release/bokeh-tables-0.12.14.min.css\");\n      Bokeh.embed.inject_css(\"https://cdn.pydata.org/bokeh/release/bokeh-tables-0.12.14.min.css\");\n    }\n  ];\n\n  function run_inline_js() {\n    \n    if ((root.Bokeh !== undefined) || (force === true)) {\n      for (var i = 0; i < inline_js.length; i++) {\n        inline_js[i].call(root, root.Bokeh);\n      }if (force === true) {\n        display_loaded();\n      }} else if (Date.now() < root._bokeh_timeout) {\n      setTimeout(run_inline_js, 100);\n    } else if (!root._bokeh_failed_load) {\n      console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n      root._bokeh_failed_load = true;\n    } else if (force !== true) {\n      var cell = $(document.getElementById(\"3f558812-3700-46f0-bdf3-151f3e36d121\")).parents('.cell').data().cell;\n      cell.output_area.append_execute_result(NB_LOAD_WARNING)\n    }\n\n  }\n\n  if (root._bokeh_is_loading === 0) {\n    console.log(\"Bokeh: BokehJS loaded, going straight to plotting\");\n    run_inline_js();\n  } else {\n    load_libs(js_urls, function() {\n      console.log(\"Bokeh: BokehJS plotting callback run at\", now());\n      run_inline_js();\n    });\n  }\n}(window));"
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "data": {
      "text/html": [
       "\n",
       "<div class=\"bk-root\">\n",
       "    <div class=\"bk-plotdiv\" id=\"f76e52bc-70a4-4d9d-81e3-3c77ff68e21f\"></div>\n",
       "</div>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "data": {
      "application/javascript": [
       "(function(root) {\n",
       "  function embed_document(root) {\n",
       "    \n",
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       "  var render_items = [{\"docid\":\"001ac5bd-97e1-45b7-a5ef-b461bfe2ca4d\",\"elementid\":\"f76e52bc-70a4-4d9d-81e3-3c77ff68e21f\",\"modelid\":\"0884a55f-6f95-4353-99b8-5ff199b499f4\",\"notebook_comms_target\":\"84e0d31d-b597-4ec4-b597-47897aeb9798\"}];\n",
       "  root.Bokeh.embed.embed_items_notebook(docs_json, render_items);\n",
       "\n",
       "  }\n",
       "  if (root.Bokeh !== undefined) {\n",
       "    embed_document(root);\n",
       "  } else {\n",
       "    var attempts = 0;\n",
       "    var timer = setInterval(function(root) {\n",
       "      if (root.Bokeh !== undefined) {\n",
       "        embed_document(root);\n",
       "        clearInterval(timer);\n",
       "      }\n",
       "      attempts++;\n",
       "      if (attempts > 100) {\n",
       "        console.log(\"Bokeh: ERROR: Unable to run BokehJS code because BokehJS library is missing\")\n",
       "        clearInterval(timer);\n",
       "      }\n",
       "    }, 10, root)\n",
       "  }\n",
       "})(window);"
      ],
      "application/vnd.bokehjs_exec.v0+json": ""
     },
     "metadata": {
      "application/vnd.bokehjs_exec.v0+json": {
       "id": "0884a55f-6f95-4353-99b8-5ff199b499f4"
      }
     },
     "output_type": "display_data"
    },
    {
     "data": {
      "text/html": [
       "<p><code>&lt;Bokeh Notebook handle for <strong>In[8]</strong>&gt;</code></p>"
      ],
      "text/plain": [
       "<bokeh.io.notebook.CommsHandle at 0x1c1c94d2b0>"
      ]
     },
     "execution_count": 12,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "waveform_processor = ABPWaveformProcessor()\n",
    "\n",
    "level = 7\n",
    "window_size = 1\n",
    "\n",
    "df_A = waveform_processor.processWaveform(wavesA, level, window_size)\n",
    "df_B = waveform_processor.processWaveform(wavesB, level, window_size)\n",
    "df_C = waveform_processor.processWaveform(wavesC, level, window_size)\n",
    "\n",
    "colors = [\"red\", \"olive\", \"darkred\", \"goldenrod\", \"skyblue\", \"orange\", \"salmon\"]\n",
    "\n",
    "p1 = figure(plot_width=600, plot_height=300, title=\"Detail Number vs Energy Coefficients\")\n",
    "p2 = figure(plot_width=600, plot_height=300, title=\"Average Number vs Energy Coefficients\")\n",
    "\n",
    "for color, data in zip([\"red\", \"goldenrod\", \"skyblue\"], [df_A, df_B, df_C]):\n",
    "    data = data.head(5)\n",
    "    print(data)\n",
    "    for i, coeffs in enumerate(data):\n",
    "#         print(coeffs)\n",
    "        for value in data[coeffs]:\n",
    "#             print(value)\n",
    "            y = value\n",
    "            #color = colors[i % len(colors)]\n",
    "\n",
    "            if \"cD\" in coeffs: \n",
    "                p1.circle(x=i, y=y, color=color)\n",
    "            else:\n",
    "                p2.circle(x=i, y=y, color=color)\n",
    "                #{'value': i, 'transform': Jitter(width=1)}\n",
    "\n",
    "# output_file(\"jitter.html\")\n",
    "\n",
    "output_notebook()\n",
    "\n",
    "show(column(p1,p2), notebook_handle=True)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 13,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "12\n"
     ]
    },
    {
     "data": {
      "image/png": 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      "text/plain": [
       "<matplotlib.figure.Figure at 0x1c1c94da58>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "data": {
      "image/png": "iVBORw0KGgoAAAANSUhEUgAAAzYAAACPCAYAAAAoYk5hAAAABHNCSVQICAgIfAhkiAAAAAlwSFlz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\nA9TcG63FddOWAAAAAElFTkSuQmCC\n",
      "text/plain": [
       "<matplotlib.figure.Figure at 0x1c1c99a908>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "data": {
      "image/png": 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      "text/plain": [
       "<matplotlib.figure.Figure at 0x1c1cbacfd0>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "df_whole = pd.concat([df_A, df_B, df_C])\n",
    "\n",
    "df_whole.drop(['cA1', 'cA2', 'cA3', 'cA4', 'cA5', 'cA6', 'cA7', 'cD1', 'cD2', 'cD3', 'cD4'], axis=1)\n",
    "\n",
    "min_max_scaler = preprocessing.MinMaxScaler()\n",
    "abp_train_minmax = min_max_scaler.fit_transform(df_whole)\n",
    "\n",
    "# print(pd.DataFrame(abp_train_minmax))\n",
    "\n",
    "n_samples, n_features = abp_train_minmax.shape #1622, 10\n",
    "n_digits = 3\n",
    "n_targets = ['0', '1', '2']\n",
    "\n",
    "cluster_data = KMeans(n_clusters=n_digits).fit_predict(abp_train_minmax)\n",
    "\n",
    "reduced_data = PCA(n_components=2).fit_transform(abp_train_minmax)\n",
    "\n",
    "pca_kmeans = KMeans(init='k-means++', n_clusters=n_digits, n_init=10).fit_predict(reduced_data)\n",
    "\n",
    "print(len(pca_kmeans))\n",
    "\n",
    "plt.figure(1)\n",
    "plt.plot(reduced_data[:, 0], reduced_data[:, 1], 'k.', markersize=2)\n",
    "\n",
    "plt.figure(2, figsize=(14, 2))\n",
    "plt.scatter(np.arange(0,12), cluster_data, color='red')\n",
    "\n",
    "plt.figure(3, figsize=(14, 2))\n",
    "plt.scatter(np.arange(0,12), pca_kmeans, color='blue')\n",
    "\n",
    "plt.show()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 24,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "\n",
       "    <div class=\"bk-root\">\n",
       "        <a href=\"https://bokeh.pydata.org\" target=\"_blank\" class=\"bk-logo bk-logo-small bk-logo-notebook\"></a>\n",
       "        <span id=\"a1fd5a37-2718-400c-9a06-4e9f79f6b89c\">Loading BokehJS ...</span>\n",
       "    </div>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "data": {
      "application/javascript": [
       "\n",
       "(function(root) {\n",
       "  function now() {\n",
       "    return new Date();\n",
       "  }\n",
       "\n",
       "  var force = true;\n",
       "\n",
       "  if (typeof (root._bokeh_onload_callbacks) === \"undefined\" || force === true) {\n",
       "    root._bokeh_onload_callbacks = [];\n",
       "    root._bokeh_is_loading = undefined;\n",
       "  }\n",
       "\n",
       "  var JS_MIME_TYPE = 'application/javascript';\n",
       "  var HTML_MIME_TYPE = 'text/html';\n",
       "  var EXEC_MIME_TYPE = 'application/vnd.bokehjs_exec.v0+json';\n",
       "  var CLASS_NAME = 'output_bokeh rendered_html';\n",
       "\n",
       "  /**\n",
       "   * Render data to the DOM node\n",
       "   */\n",
       "  function render(props, node) {\n",
       "    var script = document.createElement(\"script\");\n",
       "    node.appendChild(script);\n",
       "  }\n",
       "\n",
       "  /**\n",
       "   * Handle when an output is cleared or removed\n",
       "   */\n",
       "  function handleClearOutput(event, handle) {\n",
       "    var cell = handle.cell;\n",
       "\n",
       "    var id = cell.output_area._bokeh_element_id;\n",
       "    var server_id = cell.output_area._bokeh_server_id;\n",
       "    // Clean up Bokeh references\n",
       "    if (id !== undefined) {\n",
       "      Bokeh.index[id].model.document.clear();\n",
       "      delete Bokeh.index[id];\n",
       "    }\n",
       "\n",
       "    if (server_id !== undefined) {\n",
       "      // Clean up Bokeh references\n",
       "      var cmd = \"from bokeh.io.state import curstate; print(curstate().uuid_to_server['\" + server_id + \"'].get_sessions()[0].document.roots[0]._id)\";\n",
       "      cell.notebook.kernel.execute(cmd, {\n",
       "        iopub: {\n",
       "          output: function(msg) {\n",
       "            var element_id = msg.content.text.trim();\n",
       "            Bokeh.index[element_id].model.document.clear();\n",
       "            delete Bokeh.index[element_id];\n",
       "          }\n",
       "        }\n",
       "      });\n",
       "      // Destroy server and session\n",
       "      var cmd = \"import bokeh.io.notebook as ion; ion.destroy_server('\" + server_id + \"')\";\n",
       "      cell.notebook.kernel.execute(cmd);\n",
       "    }\n",
       "  }\n",
       "\n",
       "  /**\n",
       "   * Handle when a new output is added\n",
       "   */\n",
       "  function handleAddOutput(event, handle) {\n",
       "    var output_area = handle.output_area;\n",
       "    var output = handle.output;\n",
       "\n",
       "    // limit handleAddOutput to display_data with EXEC_MIME_TYPE content only\n",
       "    if ((output.output_type != \"display_data\") || (!output.data.hasOwnProperty(EXEC_MIME_TYPE))) {\n",
       "      return\n",
       "    }\n",
       "\n",
       "    var toinsert = output_area.element.find(\".\" + CLASS_NAME.split(' ')[0]);\n",
       "\n",
       "    if (output.metadata[EXEC_MIME_TYPE][\"id\"] !== undefined) {\n",
       "      toinsert[0].firstChild.textContent = output.data[JS_MIME_TYPE];\n",
       "      // store reference to embed id on output_area\n",
       "      output_area._bokeh_element_id = output.metadata[EXEC_MIME_TYPE][\"id\"];\n",
       "    }\n",
       "    if (output.metadata[EXEC_MIME_TYPE][\"server_id\"] !== undefined) {\n",
       "      var bk_div = document.createElement(\"div\");\n",
       "      bk_div.innerHTML = output.data[HTML_MIME_TYPE];\n",
       "      var script_attrs = bk_div.children[0].attributes;\n",
       "      for (var i = 0; i < script_attrs.length; i++) {\n",
       "        toinsert[0].firstChild.setAttribute(script_attrs[i].name, script_attrs[i].value);\n",
       "      }\n",
       "      // store reference to server id on output_area\n",
       "      output_area._bokeh_server_id = output.metadata[EXEC_MIME_TYPE][\"server_id\"];\n",
       "    }\n",
       "  }\n",
       "\n",
       "  function register_renderer(events, OutputArea) {\n",
       "\n",
       "    function append_mime(data, metadata, element) {\n",
       "      // create a DOM node to render to\n",
       "      var toinsert = this.create_output_subarea(\n",
       "        metadata,\n",
       "        CLASS_NAME,\n",
       "        EXEC_MIME_TYPE\n",
       "      );\n",
       "      this.keyboard_manager.register_events(toinsert);\n",
       "      // Render to node\n",
       "      var props = {data: data, metadata: metadata[EXEC_MIME_TYPE]};\n",
       "      render(props, toinsert[0]);\n",
       "      element.append(toinsert);\n",
       "      return toinsert\n",
       "    }\n",
       "\n",
       "    /* Handle when an output is cleared or removed */\n",
       "    events.on('clear_output.CodeCell', handleClearOutput);\n",
       "    events.on('delete.Cell', handleClearOutput);\n",
       "\n",
       "    /* Handle when a new output is added */\n",
       "    events.on('output_added.OutputArea', handleAddOutput);\n",
       "\n",
       "    /**\n",
       "     * Register the mime type and append_mime function with output_area\n",
       "     */\n",
       "    OutputArea.prototype.register_mime_type(EXEC_MIME_TYPE, append_mime, {\n",
       "      /* Is output safe? */\n",
       "      safe: true,\n",
       "      /* Index of renderer in `output_area.display_order` */\n",
       "      index: 0\n",
       "    });\n",
       "  }\n",
       "\n",
       "  // register the mime type if in Jupyter Notebook environment and previously unregistered\n",
       "  if (root.Jupyter !== undefined) {\n",
       "    var events = require('base/js/events');\n",
       "    var OutputArea = require('notebook/js/outputarea').OutputArea;\n",
       "\n",
       "    if (OutputArea.prototype.mime_types().indexOf(EXEC_MIME_TYPE) == -1) {\n",
       "      register_renderer(events, OutputArea);\n",
       "    }\n",
       "  }\n",
       "\n",
       "  \n",
       "  if (typeof (root._bokeh_timeout) === \"undefined\" || force === true) {\n",
       "    root._bokeh_timeout = Date.now() + 5000;\n",
       "    root._bokeh_failed_load = false;\n",
       "  }\n",
       "\n",
       "  var NB_LOAD_WARNING = {'data': {'text/html':\n",
       "     \"<div style='background-color: #fdd'>\\n\"+\n",
       "     \"<p>\\n\"+\n",
       "     \"BokehJS does not appear to have successfully loaded. If loading BokehJS from CDN, this \\n\"+\n",
       "     \"may be due to a slow or bad network connection. Possible fixes:\\n\"+\n",
       "     \"</p>\\n\"+\n",
       "     \"<ul>\\n\"+\n",
       "     \"<li>re-rerun `output_notebook()` to attempt to load from CDN again, or</li>\\n\"+\n",
       "     \"<li>use INLINE resources instead, as so:</li>\\n\"+\n",
       "     \"</ul>\\n\"+\n",
       "     \"<code>\\n\"+\n",
       "     \"from bokeh.resources import INLINE\\n\"+\n",
       "     \"output_notebook(resources=INLINE)\\n\"+\n",
       "     \"</code>\\n\"+\n",
       "     \"</div>\"}};\n",
       "\n",
       "  function display_loaded() {\n",
       "    var el = document.getElementById(\"a1fd5a37-2718-400c-9a06-4e9f79f6b89c\");\n",
       "    if (el != null) {\n",
       "      el.textContent = \"BokehJS is loading...\";\n",
       "    }\n",
       "    if (root.Bokeh !== undefined) {\n",
       "      if (el != null) {\n",
       "        el.textContent = \"BokehJS \" + root.Bokeh.version + \" successfully loaded.\";\n",
       "      }\n",
       "    } else if (Date.now() < root._bokeh_timeout) {\n",
       "      setTimeout(display_loaded, 100)\n",
       "    }\n",
       "  }\n",
       "\n",
       "\n",
       "  function run_callbacks() {\n",
       "    try {\n",
       "      root._bokeh_onload_callbacks.forEach(function(callback) { callback() });\n",
       "    }\n",
       "    finally {\n",
       "      delete root._bokeh_onload_callbacks\n",
       "    }\n",
       "    console.info(\"Bokeh: all callbacks have finished\");\n",
       "  }\n",
       "\n",
       "  function load_libs(js_urls, callback) {\n",
       "    root._bokeh_onload_callbacks.push(callback);\n",
       "    if (root._bokeh_is_loading > 0) {\n",
       "      console.log(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n",
       "      return null;\n",
       "    }\n",
       "    if (js_urls == null || js_urls.length === 0) {\n",
       "      run_callbacks();\n",
       "      return null;\n",
       "    }\n",
       "    console.log(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n",
       "    root._bokeh_is_loading = js_urls.length;\n",
       "    for (var i = 0; i < js_urls.length; i++) {\n",
       "      var url = js_urls[i];\n",
       "      var s = document.createElement('script');\n",
       "      s.src = url;\n",
       "      s.async = false;\n",
       "      s.onreadystatechange = s.onload = function() {\n",
       "        root._bokeh_is_loading--;\n",
       "        if (root._bokeh_is_loading === 0) {\n",
       "          console.log(\"Bokeh: all BokehJS libraries loaded\");\n",
       "          run_callbacks()\n",
       "        }\n",
       "      };\n",
       "      s.onerror = function() {\n",
       "        console.warn(\"failed to load library \" + url);\n",
       "      };\n",
       "      console.log(\"Bokeh: injecting script tag for BokehJS library: \", url);\n",
       "      document.getElementsByTagName(\"head\")[0].appendChild(s);\n",
       "    }\n",
       "  };var element = document.getElementById(\"a1fd5a37-2718-400c-9a06-4e9f79f6b89c\");\n",
       "  if (element == null) {\n",
       "    console.log(\"Bokeh: ERROR: autoload.js configured with elementid 'a1fd5a37-2718-400c-9a06-4e9f79f6b89c' but no matching script tag was found. \")\n",
       "    return false;\n",
       "  }\n",
       "\n",
       "  var js_urls = [\"https://cdn.pydata.org/bokeh/release/bokeh-0.12.14.min.js\", \"https://cdn.pydata.org/bokeh/release/bokeh-widgets-0.12.14.min.js\", \"https://cdn.pydata.org/bokeh/release/bokeh-tables-0.12.14.min.js\", \"https://cdn.pydata.org/bokeh/release/bokeh-gl-0.12.14.min.js\"];\n",
       "\n",
       "  var inline_js = [\n",
       "    function(Bokeh) {\n",
       "      Bokeh.set_log_level(\"info\");\n",
       "    },\n",
       "    \n",
       "    function(Bokeh) {\n",
       "      \n",
       "    },\n",
       "    function(Bokeh) {\n",
       "      console.log(\"Bokeh: injecting CSS: https://cdn.pydata.org/bokeh/release/bokeh-0.12.14.min.css\");\n",
       "      Bokeh.embed.inject_css(\"https://cdn.pydata.org/bokeh/release/bokeh-0.12.14.min.css\");\n",
       "      console.log(\"Bokeh: injecting CSS: https://cdn.pydata.org/bokeh/release/bokeh-widgets-0.12.14.min.css\");\n",
       "      Bokeh.embed.inject_css(\"https://cdn.pydata.org/bokeh/release/bokeh-widgets-0.12.14.min.css\");\n",
       "      console.log(\"Bokeh: injecting CSS: https://cdn.pydata.org/bokeh/release/bokeh-tables-0.12.14.min.css\");\n",
       "      Bokeh.embed.inject_css(\"https://cdn.pydata.org/bokeh/release/bokeh-tables-0.12.14.min.css\");\n",
       "    }\n",
       "  ];\n",
       "\n",
       "  function run_inline_js() {\n",
       "    \n",
       "    if ((root.Bokeh !== undefined) || (force === true)) {\n",
       "      for (var i = 0; i < inline_js.length; i++) {\n",
       "        inline_js[i].call(root, root.Bokeh);\n",
       "      }if (force === true) {\n",
       "        display_loaded();\n",
       "      }} else if (Date.now() < root._bokeh_timeout) {\n",
       "      setTimeout(run_inline_js, 100);\n",
       "    } else if (!root._bokeh_failed_load) {\n",
       "      console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n",
       "      root._bokeh_failed_load = true;\n",
       "    } else if (force !== true) {\n",
       "      var cell = $(document.getElementById(\"a1fd5a37-2718-400c-9a06-4e9f79f6b89c\")).parents('.cell').data().cell;\n",
       "      cell.output_area.append_execute_result(NB_LOAD_WARNING)\n",
       "    }\n",
       "\n",
       "  }\n",
       "\n",
       "  if (root._bokeh_is_loading === 0) {\n",
       "    console.log(\"Bokeh: BokehJS loaded, going straight to plotting\");\n",
       "    run_inline_js();\n",
       "  } else {\n",
       "    load_libs(js_urls, function() {\n",
       "      console.log(\"Bokeh: BokehJS plotting callback run at\", now());\n",
       "      run_inline_js();\n",
       "    });\n",
       "  }\n",
       "}(window));"
      ],
      "application/vnd.bokehjs_load.v0+json": "\n(function(root) {\n  function now() {\n    return new Date();\n  }\n\n  var force = true;\n\n  if (typeof (root._bokeh_onload_callbacks) === \"undefined\" || force === true) {\n    root._bokeh_onload_callbacks = [];\n    root._bokeh_is_loading = undefined;\n  }\n\n  \n\n  \n  if (typeof (root._bokeh_timeout) === \"undefined\" || force === true) {\n    root._bokeh_timeout = Date.now() + 5000;\n    root._bokeh_failed_load = false;\n  }\n\n  var NB_LOAD_WARNING = {'data': {'text/html':\n     \"<div style='background-color: #fdd'>\\n\"+\n     \"<p>\\n\"+\n     \"BokehJS does not appear to have successfully loaded. If loading BokehJS from CDN, this \\n\"+\n     \"may be due to a slow or bad network connection. Possible fixes:\\n\"+\n     \"</p>\\n\"+\n     \"<ul>\\n\"+\n     \"<li>re-rerun `output_notebook()` to attempt to load from CDN again, or</li>\\n\"+\n     \"<li>use INLINE resources instead, as so:</li>\\n\"+\n     \"</ul>\\n\"+\n     \"<code>\\n\"+\n     \"from bokeh.resources import INLINE\\n\"+\n     \"output_notebook(resources=INLINE)\\n\"+\n     \"</code>\\n\"+\n     \"</div>\"}};\n\n  function display_loaded() {\n    var el = document.getElementById(\"a1fd5a37-2718-400c-9a06-4e9f79f6b89c\");\n    if (el != null) {\n      el.textContent = \"BokehJS is loading...\";\n    }\n    if (root.Bokeh !== undefined) {\n      if (el != null) {\n        el.textContent = \"BokehJS \" + root.Bokeh.version + \" successfully loaded.\";\n      }\n    } else if (Date.now() < root._bokeh_timeout) {\n      setTimeout(display_loaded, 100)\n    }\n  }\n\n\n  function run_callbacks() {\n    try {\n      root._bokeh_onload_callbacks.forEach(function(callback) { callback() });\n    }\n    finally {\n      delete root._bokeh_onload_callbacks\n    }\n    console.info(\"Bokeh: all callbacks have finished\");\n  }\n\n  function load_libs(js_urls, callback) {\n    root._bokeh_onload_callbacks.push(callback);\n    if (root._bokeh_is_loading > 0) {\n      console.log(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n      return null;\n    }\n    if (js_urls == null || js_urls.length === 0) {\n      run_callbacks();\n      return null;\n    }\n    console.log(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n    root._bokeh_is_loading = js_urls.length;\n    for (var i = 0; i < js_urls.length; i++) {\n      var url = js_urls[i];\n      var s = document.createElement('script');\n      s.src = url;\n      s.async = false;\n      s.onreadystatechange = s.onload = function() {\n        root._bokeh_is_loading--;\n        if (root._bokeh_is_loading === 0) {\n          console.log(\"Bokeh: all BokehJS libraries loaded\");\n          run_callbacks()\n        }\n      };\n      s.onerror = function() {\n        console.warn(\"failed to load library \" + url);\n      };\n      console.log(\"Bokeh: injecting script tag for BokehJS library: \", url);\n      document.getElementsByTagName(\"head\")[0].appendChild(s);\n    }\n  };var element = document.getElementById(\"a1fd5a37-2718-400c-9a06-4e9f79f6b89c\");\n  if (element == null) {\n    console.log(\"Bokeh: ERROR: autoload.js configured with elementid 'a1fd5a37-2718-400c-9a06-4e9f79f6b89c' but no matching script tag was found. \")\n    return false;\n  }\n\n  var js_urls = [\"https://cdn.pydata.org/bokeh/release/bokeh-0.12.14.min.js\", \"https://cdn.pydata.org/bokeh/release/bokeh-widgets-0.12.14.min.js\", \"https://cdn.pydata.org/bokeh/release/bokeh-tables-0.12.14.min.js\", \"https://cdn.pydata.org/bokeh/release/bokeh-gl-0.12.14.min.js\"];\n\n  var inline_js = [\n    function(Bokeh) {\n      Bokeh.set_log_level(\"info\");\n    },\n    \n    function(Bokeh) {\n      \n    },\n    function(Bokeh) {\n      console.log(\"Bokeh: injecting CSS: https://cdn.pydata.org/bokeh/release/bokeh-0.12.14.min.css\");\n      Bokeh.embed.inject_css(\"https://cdn.pydata.org/bokeh/release/bokeh-0.12.14.min.css\");\n      console.log(\"Bokeh: injecting CSS: https://cdn.pydata.org/bokeh/release/bokeh-widgets-0.12.14.min.css\");\n      Bokeh.embed.inject_css(\"https://cdn.pydata.org/bokeh/release/bokeh-widgets-0.12.14.min.css\");\n      console.log(\"Bokeh: injecting CSS: https://cdn.pydata.org/bokeh/release/bokeh-tables-0.12.14.min.css\");\n      Bokeh.embed.inject_css(\"https://cdn.pydata.org/bokeh/release/bokeh-tables-0.12.14.min.css\");\n    }\n  ];\n\n  function run_inline_js() {\n    \n    if ((root.Bokeh !== undefined) || (force === true)) {\n      for (var i = 0; i < inline_js.length; i++) {\n        inline_js[i].call(root, root.Bokeh);\n      }if (force === true) {\n        display_loaded();\n      }} else if (Date.now() < root._bokeh_timeout) {\n      setTimeout(run_inline_js, 100);\n    } else if (!root._bokeh_failed_load) {\n      console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n      root._bokeh_failed_load = true;\n    } else if (force !== true) {\n      var cell = $(document.getElementById(\"a1fd5a37-2718-400c-9a06-4e9f79f6b89c\")).parents('.cell').data().cell;\n      cell.output_area.append_execute_result(NB_LOAD_WARNING)\n    }\n\n  }\n\n  if (root._bokeh_is_loading === 0) {\n    console.log(\"Bokeh: BokehJS loaded, going straight to plotting\");\n    run_inline_js();\n  } else {\n    load_libs(js_urls, function() {\n      console.log(\"Bokeh: BokehJS plotting callback run at\", now());\n      run_inline_js();\n    });\n  }\n}(window));"
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "data": {
      "text/html": [
       "\n",
       "<div class=\"bk-root\">\n",
       "    <div class=\"bk-plotdiv\" id=\"be49cd82-e4f7-412b-8ed5-c6dd1c3a8526\"></div>\n",
       "</div>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "data": {
      "application/javascript": [
       "(function(root) {\n",
       "  function embed_document(root) {\n",
       "    \n",
       "  var docs_json = 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d\":\"bfc27d49-a24d-4f5e-b6db-1b377405da64\",\"type\":\"LinearScale\"},{\"attributes\":{\"fill_alpha\":{\"value\":0.5},\"fill_color\":{\"value\":\"navy\"},\"line_alpha\":{\"value\":0.5},\"line_color\":{\"value\":\"navy\"},\"size\":{\"units\":\"screen\",\"value\":5},\"x\":{\"field\":\"x\"},\"y\":{\"field\":\"y\"}},\"id\":\"a04ed308-2da2-4892-98ed-8d7281260ffa\",\"type\":\"Circle\"},{\"attributes\":{\"source\":{\"id\":\"39bb0f61-4d23-4761-b723-3c97746c3c1a\",\"type\":\"ColumnDataSource\"}},\"id\":\"f2113047-0c99-420f-b6bc-34345db5c56d\",\"type\":\"CDSView\"}],\"root_ids\":[\"5ab63e03-780e-4766-8635-c75aa3dd25d1\"]},\"title\":\"Bokeh Application\",\"version\":\"0.12.14\"}};\n",
       "  var render_items = [{\"docid\":\"fba2e2f8-d067-4033-935a-b80df0aec97d\",\"elementid\":\"be49cd82-e4f7-412b-8ed5-c6dd1c3a8526\",\"modelid\":\"5ab63e03-780e-4766-8635-c75aa3dd25d1\",\"notebook_comms_target\":\"76444cf7-b3bc-4739-b672-a2dd59bbb6fd\"}];\n",
       "  root.Bokeh.embed.embed_items_notebook(docs_json, render_items);\n",
       "\n",
       "  }\n",
       "  if (root.Bokeh !== undefined) {\n",
       "    embed_document(root);\n",
       "  } else {\n",
       "    var attempts = 0;\n",
       "    var timer = setInterval(function(root) {\n",
       "      if (root.Bokeh !== undefined) {\n",
       "        embed_document(root);\n",
       "        clearInterval(timer);\n",
       "      }\n",
       "      attempts++;\n",
       "      if (attempts > 100) {\n",
       "        console.log(\"Bokeh: ERROR: Unable to run BokehJS code because BokehJS library is missing\")\n",
       "        clearInterval(timer);\n",
       "      }\n",
       "    }, 10, root)\n",
       "  }\n",
       "})(window);"
      ],
      "application/vnd.bokehjs_exec.v0+json": ""
     },
     "metadata": {
      "application/vnd.bokehjs_exec.v0+json": {
       "id": "5ab63e03-780e-4766-8635-c75aa3dd25d1"
      }
     },
     "output_type": "display_data"
    },
    {
     "data": {
      "text/html": [
       "<p><code>&lt;Bokeh Notebook handle for <strong>In[22]</strong>&gt;</code></p>"
      ],
      "text/plain": [
       "<bokeh.io.notebook.CommsHandle at 0x1c1fb6f7f0>"
      ]
     },
     "execution_count": 24,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "p = figure(plot_width=900, plot_height=400)\n",
    "\n",
    "# add a circle renderer with a size, color, and alpha\n",
    "p.circle(np.arange(0, len(df_whole)), df_whole[\"cD7\"], size=5, color=\"olive\", alpha=0.5)\n",
    "p.circle(np.arange(0, len(df_whole)), df_whole[\"cD6\"], size=5, color=\"red\", alpha=0.5)\n",
    "p.circle(np.arange(0, len(df_whole)), df_whole[\"cD5\"], size=5, color=\"navy\", alpha=0.5)\n",
    "\n",
    "output_notebook()\n",
    "# show the results\n",
    "show(p, notebook_handle=True)"
   ]
  }
 ],
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  "anaconda-cloud": {},
  "kernelspec": {
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