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362 Open 477 Closed
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Issues list

salmon quantmerge skipped the nucleotide IDs that have multiple sequences - Metagenome dataset
#910 opened Jan 30, 2024 by jiazhou0116
2
icu version conflict with libboost
#909 opened Jan 30, 2024 by JustinYeon
After using SAMtools to convert bam to fastq, the salmon quantification mapping rate is super low: is it normal?
#908 opened Jan 27, 2024 by KOBE24DUNK
Only 50% reads aligned on PE human mRNA stranded library
#905 opened Jan 24, 2024 by cecile2429
Please make gencode SA files available
#904 opened Dec 25, 2023 by Rfriedmancolumbia
Quantification in Alignment mode for Nanopore Data
#903 opened Dec 8, 2023 by Harshangda
2
segmentation fault when skipQuant flag is set
#902 opened Nov 30, 2023 by aydemiro
View salmon quant output in a browser
#900 opened Nov 14, 2023 by steven-bioinfo
1
Salmon quant error in --ont mode (Bus error (core dumped)
#898 opened Nov 4, 2023 by rugilemat
Hi @Ray6283,
#890 opened Oct 17, 2023 by Ray6283
1
(alevin) Specifying --read-geometry in paired-end samples
#886 opened Oct 14, 2023 by yyoshiaki
Segmentation fault in salmon quant
#881 opened Oct 11, 2023 by astrdhr
4
How to handle Multiplet data?
#879 opened Oct 10, 2023 by mugpeng
Inconsistency in salmon quant Documentation Regarding --eqclasses Option
#877 opened Oct 2, 2023 by Vida0
2
mapping features from chromium v2 10X library
#875 opened Sep 27, 2023 by andy3nieto
32-bit support?
#872 opened Sep 15, 2023 by robertaboukhalil
salmon quant was invoked improperly. For usage information, try salmon quant --help Exiting.
#870 opened Aug 27, 2023 by Alecrim24
2
If this is a paired-end library, are you sure the reads are properly paired?
#869 opened Aug 26, 2023 by calebmallery
Alevin failing to quantitate Split-seq reads
#867 opened Aug 17, 2023 by jmerkin
fix cmake to find hts
#866 opened Aug 3, 2023 by pabloaledo
3
Errors in Salmon Indexing with --features Option
#865 opened Aug 2, 2023 by uveksamoosmeh
1
Salmon quant reports transcripts in BAM not found in FASTA, despite GFFREAD correction
#863 opened Jul 29, 2023 by majdabdul
2
Possible to add support for 10x VDJ?
#861 opened Jul 19, 2023 by jeremymsimon
2
[error] Can't find left Boundary.
#853 opened Jun 19, 2023 by lancy-liang
Issue with the quant merge
#849 opened May 18, 2023 by hasanalanya
ProTip! no:milestone will show everything without a milestone.