You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I found the correctedReads number in featureDump.txt is a bit less than that in fastqc report. Here is the featuredumped.txt:
And here is the reads number from the same fastq using fastqc:
In my case, the length of read1 is 8 bp and they are all barcodes. I customized my_own_permit_list to include all the barcodes in reads1 and then generated the featureDump.txt by performing simpleaf quant using --explicit-pl my_own_permit_list.txt. so I suppose the correctedReads should be the same as that reported by fastqc. But it seems that correctedReads is less than the sequences number of reads1 fastq. What's the correctedReads ? where can find the documentation on featureDumped.txt ?
The text was updated successfully, but these errors were encountered:
Dear,
I found the correctedReads number in featureDump.txt is a bit less than that in fastqc report. Here is the featuredumped.txt:
And here is the reads number from the same fastq using fastqc:
In my case, the length of read1 is 8 bp and they are all barcodes. I customized my_own_permit_list to include all the barcodes in reads1 and then generated the featureDump.txt by performing simpleaf quant using --explicit-pl my_own_permit_list.txt. so I suppose the correctedReads should be the same as that reported by fastqc. But it seems that correctedReads is less than the sequences number of reads1 fastq. What's the correctedReads ? where can find the documentation on featureDumped.txt ?
The text was updated successfully, but these errors were encountered: