.gitignore

bin/

test/data/d1_*
test/data/d2_*
test/data/d3_*
test/data/d4_*
test/data/d5_*
test/data/d6_*
test/data/d7_*
test/data/d8_*
test/data/download_d8_*
test/data/*/*.fa
test/data/*/*.fasta
test/data/*/*.tar
test/data/*/*.tar.gz
test/data/*/fast5_files
test/data/*/slurm-*

/test/data/random_community/1_symbolic_links.sh

*/*.paf
test/evaluation/*/*/slurm*.out
test/evaluation/*/*/*.paf
test/evaluation/*/*/rawhash
test/evaluation/*/*/rawhash2
test/evaluation/*/*/uncalled
test/evaluation/*/*/*.abundance
test/evaluation/*/*/*/slurm*.out
test/evaluation/*/*/*/*.paf
test/evaluation/*/*/*/rawhash
test/evaluation/*/*/*/rawhash2
test/evaluation/*/*/*/uncalled
test/evaluation/*/*/*/*.abundance
test/evaluation/*/comparison/*.throughput
test/evaluation/*/comparison/*.paf
test/evaluation/*/comparison/*.comparison
test/evaluation/*/comparison/comparison.out
test/evaluation/*/comparison/comparison.err
test/evaluation/*/*/sigmap
test/evaluation/*/slurm*.out
test/evaluation/*/*.paf
test/evaluation/*/rawhash
test/evaluation/*/rawhash2
test/evaluation/*/uncalled
test/evaluation/*/sigmap
test/evaluation/read_mapping/*/comparison/*.throughput
test/evaluation/read_mapping/*/comparison/*.paf
test/evaluation/read_mapping/*/comparison/*.comparison
test/evaluation/read_mapping/*/comparison/comparison.out
test/evaluation/read_mapping/*/comparison/comparison.err

test/evaluation/*/*/slurm*
test/evaluation/*/*slurm*
test/evaluation/*/*/test_*
test/data/relative_abundance/test*
test/evaluation/*/*/comparison/*/

test/data/relative_abundance/read_ids.txt

test/scripts/*test*
test/evaluation/read_mapping/*/parameters.txt
test/evaluation/read_mapping/*/results.txt
test/evaluation/read_mapping/*parameters*.txt

test/*.paf
test/eval/*.paf
test/eval/*.time
test/eval/*.pt
test/eval/*.summary
./test/eval/slurm*.out
.vscode/
.DS_Store
*/.DS_Store
test/*.time
test/*.idx
src/*.o

extern/pod5*

test/evaluation/rawsamble/

extern/tensorflow/

test/evaluation/read_mapping/*_parameters/
test/evaluation/read_mapping/s_modify.py