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| 1 | +tool_panel_section_label: ChemicalToolBox |
| 2 | +tools: |
| 3 | +- name: rem_complex |
| 4 | + owner: recetox |
| 5 | +- name: openbabel_remions |
| 6 | + owner: bgruening |
| 7 | +- name: msconvert |
| 8 | + owner: galaxyp |
| 9 | +- name: smina |
| 10 | + owner: earlhaminst |
| 11 | +- name: apoc |
| 12 | + owner: earlhaminst |
| 13 | +- name: parmconv |
| 14 | + owner: chemteam |
| 15 | +- name: enumerate_charges |
| 16 | + owner: bgruening |
| 17 | +- name: sdf_to_tab |
| 18 | + owner: bgruening |
| 19 | +- name: fpocket |
| 20 | + owner: bgruening |
| 21 | +- name: chembl_structure_pipeline |
| 22 | + owner: bgruening |
| 23 | +- name: chembl |
| 24 | + owner: bgruening |
| 25 | +- name: ambertools_parmchk2 |
| 26 | + owner: chemteam |
| 27 | +- name: ambertools_antechamber |
| 28 | + owner: chemteam |
| 29 | +- name: ambertools_acpype |
| 30 | + owner: chemteam |
| 31 | +- name: mordred |
| 32 | + owner: bgruening |
| 33 | +- name: get_pdb |
| 34 | + owner: bgruening |
| 35 | +- name: get_pubchem |
| 36 | + owner: bgruening |
| 37 | +- name: get_online_data |
| 38 | + owner: bgruening |
| 39 | +- name: autodock_vina |
| 40 | + owner: bgruening |
| 41 | +- name: autodock_vina_prepare_ligand |
| 42 | + owner: bgruening |
| 43 | +- name: autodock_vina_prepare_box |
| 44 | + owner: bgruening |
| 45 | +- name: openbabel_remduplicates |
| 46 | + owner: bgruening |
| 47 | +- name: openbabel_addh |
| 48 | + owner: bgruening |
| 49 | +- name: openbabel_filter |
| 50 | + owner: bgruening |
| 51 | +- name: openbabel_subsearch |
| 52 | + owner: bgruening |
| 53 | +- name: openbabel_compound_convert |
| 54 | + owner: bgruening |
| 55 | +- name: openbabel_remove_protonation_state |
| 56 | + owner: bgruening |
| 57 | +- name: openbabel_spectrophore_search |
| 58 | + owner: bgruening |
| 59 | +- name: openbabel_svg_depiction |
| 60 | + owner: bgruening |
| 61 | +- name: openbabel_multi_obgrep |
| 62 | + owner: bgruening |
| 63 | +- name: openbabel_genprop |
| 64 | + owner: bgruening |
| 65 | +- name: openbabel_change_title |
| 66 | + owner: bgruening |
| 67 | +- name: openbabel_obgrep |
| 68 | + owner: bgruening |
| 69 | +- name: openbabel_remsmall |
| 70 | + owner: bgruening |
| 71 | +- name: prepare_ligands_for_docking |
| 72 | + owner: bgruening |
| 73 | +- name: biomd_neqgamma |
| 74 | + owner: chemteam |
| 75 | +- name: biomd_rmsd_clustering |
| 76 | + owner: chemteam |
| 77 | +- name: biomd_extract_clusters |
| 78 | + owner: chemteam |
| 79 | +- name: fastpca |
| 80 | + owner: chemteam |
| 81 | +- name: bio3d_dccm |
| 82 | + owner: chemteam |
| 83 | +- name: bio3d_pca_visualize |
| 84 | + owner: chemteam |
| 85 | +- name: bio3d_pca |
| 86 | + owner: chemteam |
| 87 | +- name: bio3d_rmsd |
| 88 | + owner: chemteam |
| 89 | +- name: bio3d_rmsf |
| 90 | + owner: chemteam |
| 91 | +- name: mdanalysis_extract_rmsd |
| 92 | + owner: chemteam |
| 93 | +- name: mdanalysis_ramachandran_protein |
| 94 | + owner: chemteam |
| 95 | +- name: mdanalysis_endtoend |
| 96 | + owner: chemteam |
| 97 | +- name: mdanalysis_cosine_analysis |
| 98 | + owner: chemteam |
| 99 | +- name: vmd_hbonds |
| 100 | + owner: chemteam |
| 101 | +- name: mdanalysis_hbonds |
| 102 | + owner: chemteam |
| 103 | +- name: mdanalysis_ramachandran_plot |
| 104 | + owner: chemteam |
| 105 | +- name: mdanalysis_distance |
| 106 | + owner: chemteam |
| 107 | +- name: mdanalysis_dihedral |
| 108 | + owner: chemteam |
| 109 | +- name: mdanalysis_rdf |
| 110 | + owner: chemteam |
| 111 | +- name: mdanalysis_angle |
| 112 | + owner: chemteam |
| 113 | +- name: packmol |
| 114 | + owner: chemteam |
| 115 | +- name: ctb_rdkit_descriptors |
| 116 | + owner: bgruening |
| 117 | +- name: alchemical_analysis |
| 118 | + owner: chemteam |
| 119 | +- name: gmx_editconf |
| 120 | + owner: chemteam |
| 121 | +- name: gmx_makendx |
| 122 | + owner: chemteam |
| 123 | +- name: gmx_restraints |
| 124 | + owner: chemteam |
| 125 | +- name: gmx_energy |
| 126 | + owner: chemteam |
| 127 | +- name: gmx_trj |
| 128 | + owner: chemteam |
| 129 | +- name: gmx_fep |
| 130 | + owner: chemteam |
| 131 | +- name: gmx_sim |
| 132 | + owner: chemteam |
| 133 | +- name: gmx_merge_topology_files |
| 134 | + owner: chemteam |
| 135 | +- name: gmx_nvt |
| 136 | + owner: chemteam |
| 137 | +- name: gmx_md |
| 138 | + owner: chemteam |
| 139 | +- name: gmx_solvate |
| 140 | + owner: chemteam |
| 141 | +- name: gmx_em |
| 142 | + owner: chemteam |
| 143 | +- name: gmx_setup |
| 144 | + owner: chemteam |
| 145 | +- name: md_converter |
| 146 | + owner: chemteam |
| 147 | +- name: gmx_npt |
| 148 | + owner: chemteam |
| 149 | +- name: padel |
| 150 | + owner: bgruening |
| 151 | +- name: qed |
| 152 | + owner: bgruening |
| 153 | +- name: sucos_docking_scoring |
| 154 | + owner: bgruening |
| 155 | +- name: sucos_clustering |
| 156 | + owner: bgruening |
| 157 | +- name: sucos_max_score |
| 158 | + owner: bgruening |
| 159 | +- name: openbabel_structure_distance_finder |
| 160 | + owner: bgruening |
| 161 | +- name: ctb_frankenstein_ligand |
| 162 | + owner: bgruening |
| 163 | +- name: rdock_rbcavity |
| 164 | + owner: bgruening |
| 165 | +- name: rdock_rbdock |
| 166 | + owner: bgruening |
| 167 | +- name: rdock_sort_filter |
| 168 | + owner: bgruening |
| 169 | +- name: rxdock_rbcavity |
| 170 | + owner: bgruening |
| 171 | +- name: rxdock_rbdock |
| 172 | + owner: bgruening |
| 173 | +- name: rxdock_sort_filter |
| 174 | + owner: bgruening |
| 175 | +- name: xchem_transfs_scoring |
| 176 | + owner: bgruening |
| 177 | +- name: mmpbsa_mmgbsa |
| 178 | + owner: chemteam |
| 179 | +- name: ctb_im_pbf_ev |
| 180 | + owner: bgruening |
| 181 | +- name: ctb_im_rxn_smarts_filter |
| 182 | + owner: bgruening |
| 183 | +- name: ctb_im_conformers |
| 184 | + owner: bgruening |
| 185 | +- name: ctb_im_constrained_conf_gen |
| 186 | + owner: bgruening |
| 187 | +- name: ctb_im_cluster_butina_matrix |
| 188 | + owner: bgruening |
| 189 | +- name: ctb_im_o3dalign |
| 190 | + owner: bgruening |
| 191 | +- name: ctb_im_standardize |
| 192 | + owner: bgruening |
| 193 | +- name: ctb_im_cluster_butina |
| 194 | + owner: bgruening |
| 195 | +- name: ctb_im_max_min_picker |
| 196 | + owner: bgruening |
| 197 | +- name: ctb_im_rxn_maker |
| 198 | + owner: bgruening |
| 199 | +- name: ctb_im_screen |
| 200 | + owner: bgruening |
| 201 | +- name: ctb_im_xcos |
| 202 | + owner: bgruening |
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