diff --git a/EpiAware/Manifest.toml b/EpiAware/Manifest.toml index 32ab19a5c..2b786158e 100644 --- a/EpiAware/Manifest.toml +++ b/EpiAware/Manifest.toml @@ -2,7 +2,7 @@ julia_version = "1.10.0" manifest_format = "2.0" -project_hash = "852af0e0beaa4accce6cd930983d2709e4f451f1" +project_hash = "99f69478c9e2d262b7638594210367b4601822fd" [[deps.ADTypes]] git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" @@ -119,18 +119,6 @@ version = "2.3.0" uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" version = "1.1.1" -[[deps.Arpack]] -deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] -git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" -uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" -version = "0.5.4" - -[[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" -uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" - [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] git-tree-sha1 = "bbec08a37f8722786d87bedf84eae19c020c4efa" @@ -164,9 +152,9 @@ version = "0.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] @@ -230,11 +218,6 @@ version = "0.13.8" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" -[[deps.BitFlags]] -git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.8" - [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" @@ -246,12 +229,6 @@ git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" version = "0.5.0" -[[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" -uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - [[deps.Calculus]] deps = ["LinearAlgebra"] git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" @@ -260,15 +237,15 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "213f001d1233fd3b8ef007f50c8cab29061917d8" +git-tree-sha1 = "a9f279df05c81a57e3b8baf24c9ea01a084f1a92" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.61.0" +version = "1.62.1" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "ab79d1f9754a3988a7792caec43bfdc03996020f" +git-tree-sha1 = "ad25e7d21ce10e01de973cdc68ad0f850a953c52" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.21.0" +version = "1.21.1" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] @@ -284,12 +261,6 @@ weakdeps = ["InverseFunctions"] [deps.ChangesOfVariables.extensions] ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" -[[deps.Clustering]] -deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" -uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.7" - [[deps.CodecBzip2]] deps = ["Bzip2_jll", "Libdl", "TranscodingStreams"] git-tree-sha1 = "9b1ca1aa6ce3f71b3d1840c538a8210a043625eb" @@ -302,34 +273,6 @@ git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" version = "0.7.4" -[[deps.ColorSchemes]] -deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" -uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" - -[[deps.ColorTypes]] -deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" -uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" - -[[deps.ColorVectorSpace]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" -uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" -weakdeps = ["SpecialFunctions"] - - [deps.ColorVectorSpace.extensions] - SpecialFunctionsExt = "SpecialFunctions" - -[[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" -uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" - [[deps.Combinatorics]] git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" @@ -370,12 +313,6 @@ weakdeps = ["InverseFunctions"] [deps.CompositionsBase.extensions] CompositionsBaseInverseFunctionsExt = "InverseFunctions" -[[deps.ConcurrentUtilities]] -deps = ["Serialization", "Sockets"] -git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" -uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.3.0" - [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" @@ -393,11 +330,6 @@ weakdeps = ["IntervalSets", "StaticArrays"] ConstructionBaseIntervalSetsExt = "IntervalSets" ConstructionBaseStaticArraysExt = "StaticArrays" -[[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" -uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" - [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" @@ -452,17 +384,6 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" -[[deps.Distances]] -deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" -uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.11" -weakdeps = ["ChainRulesCore", "SparseArrays"] - - [deps.Distances.extensions] - DistancesChainRulesCoreExt = "ChainRulesCore" - DistancesSparseArraysExt = "SparseArrays" - [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" @@ -543,41 +464,11 @@ git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" -[[deps.EpollShim_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" -uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" -version = "0.0.20230411+0" - -[[deps.ExceptionUnwrapping]] -deps = ["Test"] -git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" -uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.10" - -[[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" -uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.5.0+0" - [[deps.ExprTools]] git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" version = "0.1.10" -[[deps.FFMPEG]] -deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" -uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" - -[[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" -uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.4+1" - [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" @@ -621,18 +512,6 @@ version = "2.22.0" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" -[[deps.FixedPointNumbers]] -deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" -uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" - -[[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" -uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" - [[deps.Formatting]] deps = ["Printf"] git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" @@ -649,18 +528,6 @@ weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] ForwardDiffStaticArraysExt = "StaticArrays" -[[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" -uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" - -[[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" -uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" - [[deps.FunctionWrappers]] git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" @@ -674,73 +541,20 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" +version = "0.4.7" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" -[[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" -uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.9+0" - [[deps.GPUArraysCore]] deps = ["Adapt"] git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" version = "0.1.5" -[[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "3458564589be207fa6a77dbbf8b97674c9836aab" -uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.73.2" - -[[deps.GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "77f81da2964cc9fa7c0127f941e8bce37f7f1d70" -uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.73.2+0" - -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" - -[[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" -uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" - -[[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" -uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" - -[[deps.Grisu]] -git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" -uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" -version = "1.0.2" - -[[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "abbbb9ec3afd783a7cbd82ef01dcd088ea051398" -uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.1" - -[[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" -uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" - [[deps.HypergeometricFunctions]] deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" @@ -770,9 +584,15 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" + + [deps.Interpolations.weakdeps] + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.IntervalSets]] git-tree-sha1 = "581191b15bcb56a2aa257e9c160085d0f128a380" @@ -810,12 +630,6 @@ git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" -[[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" -uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.7" - [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" @@ -828,12 +642,6 @@ git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.4" -[[deps.JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "60b1194df0a3298f460063de985eae7b01bc011a" -uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.0.1+0" - [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] git-tree-sha1 = "4e0cb2f5aad44dcfdc91088e85dee4ecb22c791c" @@ -852,23 +660,11 @@ git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" version = "0.6.8" -[[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" -uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" - -[[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" -uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" - [[deps.LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] -git-tree-sha1 = "cb4619f7353fc62a1a22ffa3d7ed9791cfb47ad8" +git-tree-sha1 = "9e70165cca7459d25406367f0c55e517a9a7bfe7" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.4.2" +version = "6.5.0" [deps.LLVM.extensions] BFloat16sExt = "BFloat16s" @@ -878,15 +674,9 @@ version = "6.4.2" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2" +git-tree-sha1 = "114e3a48f13d4c18ddd7fd6a00107b4b96f60f9c" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.27+1" - -[[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" -uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.7+0" +version = "0.0.28+0" [[deps.LRUCache]] git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" @@ -897,31 +687,11 @@ weakdeps = ["Serialization"] [deps.LRUCache.extensions] SerializationExt = ["Serialization"] -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" - [[deps.LaTeXStrings]] git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" version = "1.3.1" -[[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" -uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.1" - - [deps.Latexify.extensions] - DataFramesExt = "DataFrames" - SymEngineExt = "SymEngine" - - [deps.Latexify.weakdeps] - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" - [[deps.Lazy]] deps = ["MacroTools"] git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" @@ -965,60 +735,12 @@ version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" -[[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" -uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" - -[[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" -uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" - -[[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" -uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+0" - -[[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" -uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" - [[deps.Libtask]] deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] git-tree-sha1 = "345a40c746404dd9cb1bbc368715856838ab96f2" uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" version = "0.8.6" -[[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" -uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" - -[[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" -uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" - [[deps.LineSearches]] deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"] git-tree-sha1 = "7bbea35cec17305fc70a0e5b4641477dc0789d9d" @@ -1127,22 +849,11 @@ git-tree-sha1 = "8b40681684df46785a0012d352982e22ac3be59e" uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" version = "1.25.2" -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] -git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.9" - [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" version = "2.28.2+1" -[[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" -uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" - [[deps.MicroCollections]] deps = ["BangBang", "InitialValues", "Setfield"] git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" @@ -1162,12 +873,6 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" uuid = "14a3606d-f60d-562e-9121-12d972cd8159" version = "2023.1.10" -[[deps.MultivariateStats]] -deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" -uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.2" - [[deps.MutableArithmetics]] deps = ["LinearAlgebra", "SparseArrays", "Test"] git-tree-sha1 = "806eea990fb41f9b36f1253e5697aa645bf6a9f8" @@ -1215,21 +920,10 @@ git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" version = "1.0.0" -[[deps.NearestNeighbors]] -deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" -uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.16" - [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" -[[deps.Observables]] -git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" -uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.5" - [[deps.OffsetArrays]] git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" @@ -1239,12 +933,6 @@ weakdeps = ["Adapt"] [deps.OffsetArrays.extensions] OffsetArraysAdaptExt = "Adapt" -[[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" -uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" - [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" @@ -1255,18 +943,6 @@ deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" version = "0.8.1+2" -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.1" - -[[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" -uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.0.13+0" - [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" @@ -1275,32 +951,21 @@ version = "0.5.5+0" [[deps.Optim]] deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "MathOptInterface", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] -git-tree-sha1 = "47fea72de134f75b105a5d4a1abe5c6aec89d390" +git-tree-sha1 = "d024bfb56144d947d4fafcd9cb5cafbe3410b133" uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "1.9.1" +version = "1.9.2" [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" +git-tree-sha1 = "264b061c1903bc0fe9be77cb9050ebacff66bb63" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" - -[[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" -uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" +version = "0.3.2" [[deps.OrderedCollections]] git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.6.3" -[[deps.PCRE2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+1" - [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" @@ -1319,54 +984,11 @@ git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" version = "2.8.1" -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" -version = "1.3.0" - -[[deps.Pixman_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" -uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.42.2+0" - [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" version = "1.10.0" -[[deps.PlotThemes]] -deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" -uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.1.0" - -[[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" -uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.4.0" - -[[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "c4fa93d7d66acad8f6f4ff439576da9d2e890ee0" -uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.40.1" - - [deps.Plots.extensions] - FileIOExt = "FileIO" - GeometryBasicsExt = "GeometryBasics" - IJuliaExt = "IJulia" - ImageInTerminalExt = "ImageInTerminal" - UnitfulExt = "Unitful" - - [deps.Plots.weakdeps] - FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" - GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" - IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" - ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - [[deps.PositiveFactorizations]] deps = ["LinearAlgebra"] git-tree-sha1 = "17275485f373e6673f7e7f97051f703ed5b15b20" @@ -1411,12 +1033,6 @@ git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" version = "1.9.0" -[[deps.Qt6Base_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" -uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.3+1" - [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" @@ -1453,11 +1069,13 @@ deps = ["Requires"] git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" version = "0.4.5" -weakdeps = ["FixedPointNumbers"] [deps.Ratios.extensions] RatiosFixedPointNumbersExt = "FixedPointNumbers" + [deps.Ratios.weakdeps] + FixedPointNumbers = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" + [[deps.RealDot]] deps = ["LinearAlgebra"] git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" @@ -1470,12 +1088,6 @@ git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" version = "1.3.4" -[[deps.RecipesPipeline]] -deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] -git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" -uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.6.12" - [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] git-tree-sha1 = "2bd309f5171a628efdf5309361cd8a779b9e63a9" @@ -1505,12 +1117,6 @@ git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" uuid = "189a3867-3050-52da-a836-e630ba90ab69" version = "1.2.2" -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.1" - [[deps.Requires]] deps = ["UUIDs"] git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" @@ -1565,12 +1171,13 @@ version = "0.7.0" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "75bae786dc8b07ec3c2159d578886691823bcb42" +git-tree-sha1 = "850d187a1123683aa7e593d474155e132584fb78" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.23.1" +version = "2.24.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" @@ -1580,6 +1187,7 @@ version = "2.23.1" [deps.SciMLBase.weakdeps] ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" @@ -1597,18 +1205,6 @@ git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" version = "3.0.0" -[[deps.Scratch]] -deps = ["Dates"] -git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" -uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.1" - -[[deps.SentinelArrays]] -deps = ["Dates", "Random"] -git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" -uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.1" - [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1622,17 +1218,6 @@ version = "1.1.1" deps = ["Distributed", "Mmap", "Random", "Serialization"] uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" -[[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" -uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - -[[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - [[deps.SimpleUnPack]] git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" @@ -1724,12 +1309,6 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] StatsFunsChainRulesCoreExt = "ChainRulesCore" StatsFunsInverseFunctionsExt = "InverseFunctions" -[[deps.StatsPlots]] -deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" -uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" - [[deps.StringManipulation]] deps = ["PrecompileTools"] git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" @@ -1761,12 +1340,6 @@ deps = ["Dates"] uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" version = "1.0.3" -[[deps.TableOperations]] -deps = ["SentinelArrays", "Tables", "Test"] -git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" -uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" -version = "1.2.0" - [[deps.TableTraits]] deps = ["IteratorInterfaceExtensions"] git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" @@ -1784,12 +1357,6 @@ deps = ["ArgTools", "SHA"] uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" version = "1.10.0" -[[deps.TensorCore]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" -uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" -version = "0.1.1" - [[deps.TerminalLoggers]] deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" @@ -1852,9 +1419,9 @@ version = "1.4.0" [[deps.Turing]] deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "423987de297d186871c11fc18b5f0b3b337a8e57" +git-tree-sha1 = "88b833ac38dd47b17fa78092f97980cdf02462c4" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.30.3" +version = "0.30.4" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1864,11 +1431,6 @@ version = "0.30.3" DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" Optim = "429524aa-4258-5aef-a3af-852621145aeb" -[[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" - [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" @@ -1881,29 +1443,6 @@ version = "1.0.2" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" -[[deps.UnicodeFun]] -deps = ["REPL"] -git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" -uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" -version = "0.4.1" - -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.19.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.3" - [[deps.UnsafeAtomics]] git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" @@ -1915,291 +1454,28 @@ git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" version = "0.1.3" -[[deps.Unzip]] -git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" -uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" -version = "0.2.0" - -[[deps.Vulkan_Loader_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" -uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" -version = "1.3.243+0" - -[[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" -uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.31.0+0" - -[[deps.Widgets]] -deps = ["Colors", "Dates", "Observables", "OrderedCollections"] -git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" -uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" -version = "0.6.6" - [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.6" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "801cbe47eae69adc50f36c3caec4758d2650741b" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.12.2+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" - -[[deps.XZ_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "522b8414d40c4cbbab8dee346ac3a09f9768f25d" -uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.5+0" - -[[deps.Xorg_libICE_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5" -uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.0.10+1" - -[[deps.Xorg_libSM_jll]] -deps = ["Libdl", "Pkg", "Xorg_libICE_jll"] -git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18" -uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.3+0" - -[[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" -uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" - -[[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" -uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+0" - -[[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" -uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" - -[[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" -uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+0" - -[[deps.Xorg_libXext_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" -uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" - -[[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" -uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" - -[[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" -uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" - -[[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" -uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" - -[[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" -uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" - -[[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" -uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" - -[[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" -uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" - -[[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" -uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" - -[[deps.Xorg_xcb_util_cursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" -uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" - -[[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" -uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" -uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" -uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" -uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" - -[[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" -uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" - -[[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" -uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" +version = "1.0.0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" version = "1.2.13+1" -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" - [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" uuid = "700de1a5-db45-46bc-99cf-38207098b444" version = "0.2.5" -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.43.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" - [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" version = "5.8.0+1" -[[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" -uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" - -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" - -[[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "93284c28274d9e75218a416c65ec49d0e0fcdf3d" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.40+0" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" - [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" @@ -2209,21 +1485,3 @@ version = "1.52.0+1" deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" version = "17.4.0+2" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/EpiAware/Project.toml b/EpiAware/Project.toml index b547c98e6..0237e7bea 100644 --- a/EpiAware/Project.toml +++ b/EpiAware/Project.toml @@ -9,13 +9,21 @@ LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" LogExpFunctions = "2ab3a3ac-af41-5b50-aa03-7779005ae688" Optim = "429524aa-4258-5aef-a3af-852621145aeb" Parameters = "d96e819e-fc66-5662-9728-84c9c7592b0a" -Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" QuadGK = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" [compat] -julia = "1.9,1.10" +Distributions = "0.25" +LinearAlgebra = "1.9" +LogExpFunctions = "0.3" +Optim = "1.9" +Parameters = "0.12" +QuadGK = "2.9" +Random = "1.9" +ReverseDiff = "1.15" +SparseArrays = "1.10" +Turing = "0.30" +julia = "1.9" diff --git a/EpiAware/src/EpiAware.jl b/EpiAware/src/EpiAware.jl index 2740ffdc3..26d479afc 100644 --- a/EpiAware/src/EpiAware.jl +++ b/EpiAware/src/EpiAware.jl @@ -35,7 +35,7 @@ export scan, growth_rate_to_reproductive_ratio, generate_observation_kernel, EpiModel, - log_daily_infections, + log_infections, random_walk include("utilities.jl") diff --git a/EpiAware/test/Aqua.jl b/EpiAware/test/Aqua.jl new file mode 100644 index 000000000..13e56dcc7 --- /dev/null +++ b/EpiAware/test/Aqua.jl @@ -0,0 +1,6 @@ + +@testitem "Aqua.jl" begin + using Aqua + Aqua.test_all(EpiAware, ambiguities = false) + Aqua.test_ambiguities(EpiAware) +end diff --git a/EpiAware/test/Manifest.toml b/EpiAware/test/Manifest.toml deleted file mode 100644 index acba947c6..000000000 --- a/EpiAware/test/Manifest.toml +++ /dev/null @@ -1,1380 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.10.0" -manifest_format = "2.0" -project_hash = "0dea5a2fa6648a3a05ed8cb24ee73213ffe76d33" - -[[deps.ADTypes]] -git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.6" - -[[deps.AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] - - [deps.AbstractFFTs.extensions] - AbstractFFTsChainRulesCoreExt = "ChainRulesCore" - AbstractFFTsTestExt = "Test" - -[[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "63ae0647e8db221d63256820d1e346216c65ac66" -uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "5.0.0" - -[[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "917ad8da4becae82028aba80b7e25197f0c76dd1" -uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.7.0" - -[[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" - -[[deps.Accessors]] -deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] -git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" -uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.35" - - [deps.Accessors.extensions] - AccessorsAxisKeysExt = "AxisKeys" - AccessorsIntervalSetsExt = "IntervalSets" - AccessorsStaticArraysExt = "StaticArrays" - AccessorsStructArraysExt = "StructArrays" - - [deps.Accessors.weakdeps] - AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" - IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" - Requires = "ae029012-a4dd-5104-9daa-d747884805df" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "cde29ddf7e5726c9fb511f340244ea3481267608" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.7.2" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" -uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.6.1" - 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