From c67489cd22391ffe3e3b73a40b640d7ce9d84b62 Mon Sep 17 00:00:00 2001
From: Samuel Brand <48288458+SamuelBrand1@users.noreply.github.com>
Date: Mon, 20 Jan 2025 21:51:13 +0000
Subject: [PATCH] Issue 577: Remove `doctest` (#578)

* Remove doctest and Documenter dep from testing

* remove unnecessary test env deps

* Update StackObservationModels.jl

* put df dep back
---
 EpiAware/test/EpiObsModels/StackObservationModels.jl | 2 +-
 EpiAware/test/Project.toml                           | 6 ------
 EpiAware/test/doctest.jl                             | 4 ----
 3 files changed, 1 insertion(+), 11 deletions(-)
 delete mode 100644 EpiAware/test/doctest.jl

diff --git a/EpiAware/test/EpiObsModels/StackObservationModels.jl b/EpiAware/test/EpiObsModels/StackObservationModels.jl
index 015b771f1..4c946c2d5 100644
--- a/EpiAware/test/EpiObsModels/StackObservationModels.jl
+++ b/EpiAware/test/EpiObsModels/StackObservationModels.jl
@@ -17,7 +17,7 @@
 end
 
 @testitem "StackObervationModels generate_observations works as expected" begin
-    using Turing, DynamicPPL, DataFrames
+    using Turing, DynamicPPL, DataFramesMeta
 
     struct TestObs <: AbstractTuringObservationModel
         mean::Float64
diff --git a/EpiAware/test/Project.toml b/EpiAware/test/Project.toml
index b9cb60592..4d96c1c30 100644
--- a/EpiAware/test/Project.toml
+++ b/EpiAware/test/Project.toml
@@ -3,16 +3,12 @@ Aqua = "4c88cf16-eb10-579e-8560-4a9242c79595"
 DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
 DataFramesMeta = "1313f7d8-7da2-5740-9ea0-a2ca25f37964"
 Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
-Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
 DynamicPPL = "366bfd00-2699-11ea-058f-f148b4cae6d8"
-FFMPEG = "c87230d0-a227-11e9-1b43-d7ebe4e7570a"
 FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b"
 FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000"
 ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210"
 HypothesisTests = "09f84164-cd44-5f33-b23f-e6b0d136a0d5"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
-LogDensityProblems = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c"
-LogDensityProblemsAD = "996a588d-648d-4e1f-a8f0-a84b347e47b1"
 LogExpFunctions = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
 MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d"
 OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
@@ -22,10 +18,8 @@ ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267"
 SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
 Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
 StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
-StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd"
 Suppressor = "fd094767-a336-5f1f-9728-57cf17d0bbfb"
 Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
 TestItemRunner = "f8b46487-2199-4994-9208-9a1283c18c0a"
 TestItems = "1c621080-faea-4a02-84b6-bbd5e436b8fe"
-Transducers = "28d57a85-8fef-5791-bfe6-a80928e7c999"
 Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0"
diff --git a/EpiAware/test/doctest.jl b/EpiAware/test/doctest.jl
deleted file mode 100644
index 387b9e452..000000000
--- a/EpiAware/test/doctest.jl
+++ /dev/null
@@ -1,4 +0,0 @@
-@testitem "Run docstring tests" begin
-    using Documenter
-    doctest(EpiAware)
-end