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pyproject.toml
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pyproject.toml
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[tool.poetry]
name = "mbfmri"
version = "0.0.0"
description = "Python library for general model-based fMRI analysis"
license = "GPL-3.0"
authors = [
"Yedarm Seong <[email protected]>",
"Cheol Jun Cho <[email protected]>",
"CCS-Lab <[email protected]>"
]
readme = "README.md"
repository = "https://github.com/CCS-Lab/project_model_based_fmri"
classifiers = [
"Environment :: Console",
"Intended Audience :: Developers",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
"Operating System :: OS Independent",
"Programming Language :: Python",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.6",
"Programming Language :: Python :: 3.7",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3 :: Only",
"Topic :: Scientific/Engineering"
]
[tool.poetry.dependencies]
python = "~3.7"
hbayesdm = "<=1.0.1"
nibabel = "~3.2.0"
nilearn = "~0.8.0"
glmnet = "~2.2.1"
pystan = "~2.19.1"
pybids = "~0.12.4"
scikit-image = "~0.17.2"
matplotlib = "~3.3.3"
tensorflow = "~2.4.0"
numpy = "~1.19.5"
pandas = "~1.1.4"
scikit-learn = "~0.24"
scipy = "~1.7.1"
tqdm = ">=4.0.0"
statsmodels = "~0.12.2"
PyYaml = "~5.4.1"
arviz = "~0.11.0"
shap = "~0.39.0"
seaborn = "~0.11.1"
sphinx-jsonschema = "~1.16.11"
[tool.poetry.dev-dependencies]
autopep8 = "~1.5.4"
jupyterlab = "~2.2.9"
jupyter = "~1.0.0"
pylint = "~2.6.0"
pytest = "~6.1.2"
flake8 = "~3.8.4"
[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"
# Extra packages for testing
pytest = { version = ">=6.0", optional = true }
pytest-cov = { version = "*", optional = true }
codecov = { version = "*", optional = true }
# Extra packages for documentation
sphinx = { version = "*", optional = true }
sphinx_rtd_theme = { version = "*", optional = false }
doc_utils = { version = "<0.17", optional = true }
sphinx-autobuild = { version = "*", optional = true }
recommonmark = { version = "*", optional = true }
sphinx-issues = { version = "^1.2.0", optional = true }
ipykernel = { version = "^5.3.4", optional = true }
nbsphinx = { version = "^0.8.0", optional = true }
matplotlib = { version = "^3.3.3", optional = true }
jupyterlab = { version = "^2.2.9", optional = true }