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Missing CEG and NEG references: Mouse #53

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wong-nw opened this issue Nov 15, 2024 · 2 comments
Open

Missing CEG and NEG references: Mouse #53

wong-nw opened this issue Nov 15, 2024 · 2 comments
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@wong-nw
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wong-nw commented Nov 15, 2024

Description of the bug

Need to include mouse essential genes and nonessential genes to Docker container and add flag for species in run:
https://github.com/CCBR/CRISPRSeq_Screens/blob/master/resources/bagel/CEG_mouse.txt
https://github.com/CCBR/CRISPRSeq_Screens/blob/master/resources/bagel/NEG_mouse.txt

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@wong-nw wong-nw added the bug Something isn't working label Nov 15, 2024
@wong-nw
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wong-nw commented Nov 15, 2024

Currently CRISPIN has a flag to point to the essential genes files, but the mouse versions are not included in the Docker container

@kelly-sovacool
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I think we'll want to upload these to an S3 bucket rather than include them in the Docker -- we're moving in a similar direction for our other pipelines: CCBR/RENEE#89

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