GitHub Actions Ipynb for preflight #111

	on: [workflow_dispatch]

	name: GitHub Actions Ipynb for preflight
	jobs:
	preflight:
	runs-on: ubuntu-latest
	name: Ipynb for preflight
	steps:
	- name: checkout repo
	uses: actions/checkout@v3
	- name: Extract branch name
	shell: bash
	run: echo "GitHub ref_name ${{ github.ref_name }}"
	id: extract_branch
	# - name: preflight
	# id: preflight
	# uses: c2dh/journal-of-digital-history-ipynb-preflight-action@nbconvert
	# with:
	# notebook: 'example/plotly.ipynb'
	# functions: 'checkkernel,checkcitation,checkhtml,checkoutput,checktags,checkurls,checkjavascript'
	# output_md: 'report.md'
	- name: nbconvert run
	run: \|
	pip install -r requirements.txt
	python -m pip install jupyter nbconvert nbformat
	python -m spacy download en_core_web_lg
	jupyter nbconvert --execute --to notebook --inplace --ExecutePreprocessor.timeout=-1 checkmd.ipynb
	# Use the output from the `preflight` step
	- name: Use the output
	run: echo "Notebook path ${{ steps.preflight.outputs.notebook_path }} - workspace ${{ steps.preflight.outputs.workspace }}"
	- name: commit changes
	uses: stefanzweifel/git-auto-commit-action@v4
	with:
	file_pattern: '*.md'
	- name: create pull request
	run: gh pr create -B "master" -H "nbconvert" --title 'Merge nbconvert into master' --body 'Created by Github action'
	env:
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
	- name: Run shell cmd
	run: echo "Preflight check on https://github.com/${{github.repository}}/blob/${{github.ref_name}}/${{steps.preflight.outputs.notebook}}"

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