Installer broken by h5py, webbrowser, et al

[cornpo]

I did git clone, then; ./setup.py --prefix=../neuro/ --verbose --blender-version 3.1

Installing collected packages: pytz, tzdata, six, numpy, python-dateutil, pandas
ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
botocore 1.31.68 requires urllib3<2.1,>=1.25.4; python_version >= "3.10", which is not installed.
Successfully installed numpy-1.26.1 pandas-2.1.2 python-dateutil-2.8.2 pytz-2023.3.post1 six-1.16.0 tzdata-2023.3
INSTALL: ../neuro//bbp-blender-3.1/blender-bbp/3.1/python/bin//pip install --ignore-installed Pillow
* SHELL: ../neuro//bbp-blender-3.1/blender-bbp/3.1/python/bin//pip install --ignore-installed Pillow
Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com
Collecting Pillow
Downloading Pillow-10.1.0-cp310-cp310-manylinux_2_28_x86_64.whl.metadata (9.5 kB)
Downloading Pillow-10.1.0-cp310-cp310-manylinux_2_28_x86_64.whl (3.6 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.6/3.6 MB 7.4 MB/s eta 0:00:00
Installing collected packages: Pillow
Successfully installed Pillow-10.1.0
INSTALL: ../neuro//bbp-blender-3.1/blender-bbp/3.1/python/bin//pip install --ignore-installed webbrowser
* SHELL: ../neuro//bbp-blender-3.1/blender-bbp/3.1/python/bin//pip install --ignore-installed webbrowser
Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com
ERROR: Could not find a version that satisfies the requirement webbrowser (from versions: none)
ERROR: No matching distribution found for webbrowser
INSTALL: ../neuro//bbp-blender-3.1/blender-bbp/3.1/python/bin//pip install --ignore-installed tqdm
* SHELL: ../neuro//bbp-blender-3.1/blender-bbp/3.1/python/bin//pip install --ignore-installed tqdm
Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com
Collecting tqdm
Downloading tqdm-4.66.1-py3-none-any.whl.metadata (57 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 57.6/57.6 kB 1.8 MB/s eta 0:00:00
Downloading tqdm-4.66.1-py3-none-any.whl (78 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 78.3/78.3 kB 7.8 MB/s eta 0:00:00
Installing collected packages: tqdm
Successfully installed tqdm-4.66.1
INSTALL: ../neuro//bbp-blender-3.1/blender-bbp/3.1/python/bin//pip install --ignore-installed morphio
* SHELL: ../neuro//bbp-blender-3.1/blender-bbp/3.1/python/bin//pip install --ignore-installed morphio
Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com
Collecting morphio
Downloading MorphIO-3.3.6-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.5 kB)
Collecting numpy>=1.14.1 (from morphio)
Downloading numpy-1.26.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 61.2/61.2 kB 1.6 MB/s eta 0:00:00
Downloading MorphIO-3.3.6-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.7 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.7/2.7 MB 9.2 MB/s eta 0:00:00
Downloading numpy-1.26.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 18.2/18.2 MB 10.3 MB/s eta 0:00:00
Installing collected packages: numpy, morphio
Successfully installed morphio-3.3.6 numpy-1.26.1
INSTALL: ../neuro//bbp-blender-3.1/blender-bbp/3.1/python/bin//pip install --ignore-installed h5py==2.10.0
* SHELL: ../neuro//bbp-blender-3.1/blender-bbp/3.1/python/bin//pip install --ignore-installed h5py==2.10.0
Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com
Collecting h5py==2.10.0
Downloading h5py-2.10.0.tar.gz (301 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 301.1/301.1 kB 3.2 MB/s eta 0:00:00
Preparing metadata (setup.py) ... done
Collecting numpy>=1.7 (from h5py==2.10.0)
Downloading numpy-1.26.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 61.2/61.2 kB 20.6 MB/s eta 0:00:00
Collecting six (from h5py==2.10.0)
Downloading six-1.16.0-py2.py3-none-any.whl (11 kB)
Downloading numpy-1.26.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 18.2/18.2 MB 10.3 MB/s eta 0:00:00
Building wheels for collected packages: h5py
Building wheel for h5py (setup.py) ... error
error: subprocess-exited-with-error

× python setup.py bdist_wheel did not run successfully.
│ exit code: 1
╰─> [66 lines of output]
/home/cornpop/.local/lib/python3.10/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-cpython-310
creating build/lib.linux-x86_64-cpython-310/h5py
copying h5py/version.py -> build/lib.linux-x86_64-cpython-310/h5py
copying h5py/ipy_completer.py -> build/lib.linux-x86_64-cpython-310/h5py
copying h5py/highlevel.py -> build/lib.linux-x86_64-cpython-310/h5py
copying h5py/h5py_warnings.py -> build/lib.linux-x86_64-cpython-310/h5py
copying h5py/init.py -> build/lib.linux-x86_64-cpython-310/h5py
creating build/lib.linux-x86_64-cpython-310/h5py/_hl
copying h5py/_hl/vds.py -> build/lib.linux-x86_64-cpython-310/h5py/_hl
copying h5py/_hl/selections2.py -> build/lib.linux-x86_64-cpython-310/h5py/_hl
copying h5py/_hl/selections.py -> build/lib.linux-x86_64-cpython-310/h5py/_hl
copying h5py/_hl/group.py -> build/lib.linux-x86_64-cpython-310/h5py/_hl
copying h5py/_hl/filters.py -> build/lib.linux-x86_64-cpython-310/h5py/_hl
copying h5py/_hl/files.py -> build/lib.linux-x86_64-cpython-310/h5py/_hl
copying h5py/_hl/dims.py -> build/lib.linux-x86_64-cpython-310/h5py/_hl
copying h5py/_hl/datatype.py -> build/lib.linux-x86_64-cpython-310/h5py/_hl
copying h5py/_hl/dataset.py -> build/lib.linux-x86_64-cpython-310/h5py/_hl
copying h5py/_hl/compat.py -> build/lib.linux-x86_64-cpython-310/h5py/_hl
copying h5py/_hl/base.py -> build/lib.linux-x86_64-cpython-310/h5py/_hl
copying h5py/_hl/attrs.py -> build/lib.linux-x86_64-cpython-310/h5py/_hl
copying h5py/_hl/init.py -> build/lib.linux-x86_64-cpython-310/h5py/_hl
creating build/lib.linux-x86_64-cpython-310/h5py/tests
copying h5py/tests/test_threads.py -> build/lib.linux-x86_64-cpython-310/h5py/tests
copying h5py/tests/test_slicing.py -> build/lib.linux-x86_64-cpython-310/h5py/tests
copying h5py/tests/test_selections.py -> build/lib.linux-x86_64-cpython-310/h5py/tests
copying h5py/tests/test_objects.py -> build/lib.linux-x86_64-cpython-310/h5py/tests
copying h5py/tests/test_h5t.py -> build/lib.linux-x86_64-cpython-310/h5py/tests
copying h5py/tests/test_h5pl.py -> build/lib.linux-x86_64-cpython-310/h5py/tests
copying h5py/tests/test_h5p.py -> build/lib.linux-x86_64-cpython-310/h5py/tests
copying h5py/tests/test_h5f.py -> build/lib.linux-x86_64-cpython-310/h5py/tests
copying h5py/tests/test_h5d_direct_chunk.py -> build/lib.linux-x86_64-cpython-310/h5py/tests
copying h5py/tests/test_h5.py -> build/lib.linux-x86_64-cpython-310/h5py/tests
copying h5py/tests/test_group.py -> build/lib.linux-x86_64-cpython-310/h5py/tests
copying h5py/tests/test_filters.py -> build/lib.linux-x86_64-cpython-310/h5py/tests
copying h5py/tests/test_file_image.py -> build/lib.linux-x86_64-cpython-310/h5py/tests
copying h5py/tests/test_file2.py -> build/lib.linux-x86_64-cpython-310/h5py/tests
copying h5py/tests/test_file.py -> build/lib.linux-x86_64-cpython-310/h5py/tests
copying h5py/tests/test_dtype.py -> build/lib.linux-x86_64-cpython-310/h5py/tests
copying h5py/tests/test_dims_dimensionproxy.py -> build/lib.linux-x86_64-cpython-310/h5py/tests
copying h5py/tests/test_dimension_scales.py -> build/lib.linux-x86_64-cpython-310/h5py/tests
copying h5py/tests/test_deprecation.py -> build/lib.linux-x86_64-cpython-310/h5py/tests
copying h5py/tests/test_datatype.py -> build/lib.linux-x86_64-cpython-310/h5py/tests
copying h5py/tests/test_dataset_swmr.py -> build/lib.linux-x86_64-cpython-310/h5py/tests
copying h5py/tests/test_dataset_getitem.py -> build/lib.linux-x86_64-cpython-310/h5py/tests
copying h5py/tests/test_dataset.py -> build/lib.linux-x86_64-cpython-310/h5py/tests
copying h5py/tests/test_completions.py -> build/lib.linux-x86_64-cpython-310/h5py/tests
copying h5py/tests/test_base.py -> build/lib.linux-x86_64-cpython-310/h5py/tests
copying h5py/tests/test_attrs_data.py -> build/lib.linux-x86_64-cpython-310/h5py/tests
copying h5py/tests/test_attrs.py -> build/lib.linux-x86_64-cpython-310/h5py/tests
copying h5py/tests/test_attribute_create.py -> build/lib.linux-x86_64-cpython-310/h5py/tests
copying h5py/tests/common.py -> build/lib.linux-x86_64-cpython-310/h5py/tests
copying h5py/tests/init.py -> build/lib.linux-x86_64-cpython-310/h5py/tests
creating build/lib.linux-x86_64-cpython-310/h5py/tests/test_vds
copying h5py/tests/test_vds/test_virtual_source.py -> build/lib.linux-x86_64-cpython-310/h5py/tests/test_vds
copying h5py/tests/test_vds/test_lowlevel_vds.py -> build/lib.linux-x86_64-cpython-310/h5py/tests/test_vds
copying h5py/tests/test_vds/test_highlevel_vds.py -> build/lib.linux-x86_64-cpython-310/h5py/tests/test_vds
copying h5py/tests/test_vds/init.py -> build/lib.linux-x86_64-cpython-310/h5py/tests/test_vds
running build_ext
Loading library to get version: libhdf5.so
error: libhdf5.so: cannot open shared object file: No such file or directory
[end of output]

note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for h5py
Running setup.py clean for h5py
Failed to build h5py
ERROR: Could not build wheels for h5py, which is required to install pyproject.toml-based projects
* Installing: BBP dependencies
* SHELL: ../neuro//bbp-blender-3.1/blender-bbp/3.1/python/bin//pip install -i https://bbpteam.epfl.ch/repository/devpi/simple/ bluepy
Looking in indexes: https://bbpteam.epfl.ch/repository/devpi/simple/, https://pypi.ngc.nvidia.com
ERROR: Could not find a version that satisfies the requirement bluepy (from versions: none)
ERROR: No matching distribution found for bluepy
* SHELL: ../neuro//bbp-blender-3.1/blender-bbp/3.1/python/bin//pip install -i https://bbpteam.epfl.ch/repository/devpi/simple/ bluepy_configfile
Looking in indexes: https://bbpteam.epfl.ch/repository/devpi/simple/, https://pypi.ngc.nvidia.com
ERROR: Could not find a version that satisfies the requirement bluepy_configfile (from versions: none)
ERROR: No matching distribution found for bluepy_configfile
* Cleaning
* SHELL: rm ../neuro//bbp-blender-3.1/blender.tar.xz

[marwan-abdellah]

@cornpo which operating system ?

[KeremKurban]

I have the same problem with windows on unix shell (wsl)

[KeremKurban]

After making a ssh connection , the installation finished but following the rest of the installation guide, it is still not running

./blender: error while loading shared libraries: libXrender.so.1: cannot open shared object file: No such file or directory