DESCRIPTION

Package: statgenMPP
Title: QTL Mapping for Multi Parent Populations
Version: 1.0.4
Date: 2025-02-11
Authors@R: c(person(given = "Martin", 
                    family = "Boer", 
                    email = "martin.boer@wur.nl", 
                    role = "aut",
                    comment = c(ORCID = "0000-0002-1879-4588")),
             person(given = "Wenhao", 
                    family = "Li", 
                    role = "aut",
                    comment = c(ORCID = "0000-0001-5719-5775")),        
             person(given = "Bart-Jan", 
                    family = "van Rossum", 
                    email = "bart-jan.vanrossum@wur.nl", 
                    role = c("aut", "cre"),
                    comment = c(ORCID = "0000-0002-8673-2514")),
             person(given = "Fred", 
                    family = "van Eeuwijk",
                    role = "ctb",
                    comment = c(ORCID = "0000-0003-3672-2921")))        
Description: For Multi Parent Populations (MPP) Identity By Descend (IBD) 
    probabilities are computed using Hidden Markov Models. These probabilities 
    are then used in a mixed model approach for QTL Mapping as described in 
    Li et al. (<doi:10.1007/s00122-021-03919-7>).
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Depends:
    R (>= 3.6),
    statgenGWAS (>= 1.0.9)
Imports: 
    data.table,
    foreach,
    ggplot2,
    gridExtra,
    LMMsolver (>= 1.0.5),
    rlang,
    scales,
    spam,
    statgenIBD (>= 1.0.8)
Suggests: 
    rmarkdown,
    knitr,
    tinytest
VignetteBuilder: knitr
URL: https://biometris.github.io/statgenMPP/index.html, https://github.com/Biometris/statgenMPP/
BugReports: https://github.com/Biometris/statgenMPP/issues