_pkgdown.yml

template:
  bootstrap: 5

home:
  title: An R package for calculation of Identity by Descent probabilities

navbar:
  title: "statgenIBD"
  left:
    - icon: fa-home
      href: index.html
    - text: "Vignettes"
      href: articles/index.html
  right:
    - icon: fa-newspaper-o
      text: "news"
      href: news/index.html
    - icon: fa-file-code-o
      text: "functions"
      href: reference/index.html
    - icon: fa-seedling
      text: "other packages"
      menu:
        - text: "statgenSTA"
          href: https://biometris.github.io/statgenSTA
        - text: "statgenGxE"
          href: https://biometris.github.io/statgenGxE
        - text: "statgenGWAS"
          href: https://biometris.github.io/statgenGWAS
        - text: "statgenHTP"
          href: https://biometris.github.io/statgenHTP
        - text: "statgenMPP"
          href: https://biometris.github.io/statgenMPP
        - text: "statgenQTLxT"
          href: https://biometris.github.io/statgenQTLxT
        - text: "LMMsolver"
          href: https://biometris.github.io/LMMsolver
    - icon: fa-github fa-lg fab
      text: "github"
      href: https://github.com/Biometris/statgenIBD


articles:
  - title: "Vignettes"
    desc: >
      The first vignette provides a full description of the statgenIBD package
      including some fully worked examples. The second vignette shows the custom
      file format for storing IBD probabilities.
    contents:
      - IBDCalculations
      - IBDFileFormat

reference:
- title: IBD calculations
- contents:
  - calcIBD
  - plot.IBDprob
  - summary.IBDprob
  - getProbs
  - c.IBDprob
  - writeFlapjack
  - readIBDs
  - writeIBDs
  - readRABBIT