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HPA using utils #16

Merged
merged 19 commits into from
Jun 26, 2024
Merged

HPA using utils #16

merged 19 commits into from
Jun 26, 2024

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yoavkt
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@yoavkt yoavkt commented Jun 24, 2024

In this PR we refactored the code in the retrieve HPA tasks

yoavkt added 15 commits June 24, 2024 11:34
commit ccb0cda
Merge: 4b1e3d1 715e118
Author: YoavKT <[email protected]>
Date:   Mon Jun 24 14:37:05 2024 +0300

    Merge pull request #14 from BiomedSciAI/genefactor_using_utils

    Geneformer using utils

commit 715e118
Author: Yoav Kan-Tor <[email protected]>
Date:   Mon Jun 24 12:58:45 2024 +0300

    fix the local load

commit 4b1e3d1
Merge: 9c44a64 ab11d25
Author: edenjenzohar <[email protected]>
Date:   Mon Jun 24 12:03:37 2024 +0300

    Merge pull request #15 from BiomedSciAI/create_geneformer_extraction_script

    Create geneformer extraction script

commit 9c44a64
Merge: b893500 98a597a
Author: YoavKT <[email protected]>
Date:   Mon Jun 24 11:58:19 2024 +0300

    Merge pull request #13 from BiomedSciAI/gene2vec_utils

    Gene2vec using utils

commit ab11d25
Author: edenjenzohar <[email protected]>
Date:   Mon Jun 24 11:48:56 2024 +0300

    add args to save encodings method

commit 2c40436
Author: edenjenzohar <[email protected]>
Date:   Mon Jun 24 11:12:15 2024 +0300

    Add documentation

commit 8c5e679
Author: edenjenzohar <[email protected]>
Date:   Mon Jun 24 10:51:55 2024 +0300

    Add return of downloaded file path

commit 473d3c2
Author: edenjenzohar <[email protected]>
Date:   Mon Jun 24 10:42:17 2024 +0300

    Remove repetitive method

commit 369d3ea
Author: edenjenzohar <[email protected]>
Date:   Sun Jun 23 18:31:42 2024 +0300

    Add symbol as index

commit 2db478b
Author: edenjenzohar <[email protected]>
Date:   Sun Jun 23 18:25:33 2024 +0300

    Update dir path in tempdir

commit 70d2bf2
Author: edenjenzohar <[email protected]>
Date:   Sun Jun 23 16:35:12 2024 +0300

    add saving encodings method

commit 2b37453
Author: edenjenzohar <[email protected]>
Date:   Sun Jun 23 15:01:33 2024 +0300

    Add method for appending the symbols as the index

commit ce829da
Author: edenjenzohar <[email protected]>
Date:   Sun Jun 23 14:34:42 2024 +0300

    Initial commit
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minor comments

scripts/tasks_retrival/HPA_tasks_creation.py Show resolved Hide resolved
scripts/tasks_retrival/HPA_tasks_creation.py Show resolved Hide resolved
@yoavkt yoavkt merged commit 1b92f99 into main Jun 26, 2024
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@yoavkt yoavkt deleted the hpa_using_utils branch June 26, 2024 11:12
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2 participants