From 918e799bd0a0eea52d6190e0627e27e8187f93e7 Mon Sep 17 00:00:00 2001 From: LiNk-NY Date: Mon, 14 Aug 2023 18:49:43 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20Biocondu?= =?UTF-8?q?ctor/BuildABiocWorkshop@7da6ed8fd898682b9ff2638fe53b55e8053b7fc?= =?UTF-8?q?8=20=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- articles/HOWTO_BUILD_WORKSHOP.html | 34 +++++++++++++++--------------- index.html | 4 ++-- pkgdown.yml | 4 ++-- 3 files changed, 21 insertions(+), 21 deletions(-) diff --git a/articles/HOWTO_BUILD_WORKSHOP.html b/articles/HOWTO_BUILD_WORKSHOP.html index 83bb7fc..b54da2f 100644 --- a/articles/HOWTO_BUILD_WORKSHOP.html +++ b/articles/HOWTO_BUILD_WORKSHOP.html @@ -99,39 +99,39 @@

Quickstart
  • -Create a repo from this -template and rename it (do not fork the repository).
      +Create a repo from this template and rename +it (do not fork the repository). +
    • -Edit DESCRIPTION -file
        +Edit DESCRIPTION file +
        • -Change package name
          • +Change package name
        • -Change title and -description
          • +Change title and description
        • -Change authors
          • +Change authors
        • -Check dependencies
          • +Check dependencies
        • -Change DockerImage tag
          • +Change DockerImage tag
      • -Edit ’_pkgdown.yml’ (and +Edit ’_pkgdown.yml’ (and .github/workflows yaml file as needed)
      • -Write a normal R package that -can be installed
        • +Write a normal R package that can be +installed
      • -Include one or more vignettes -that will constitute the workshop materials
        • +Include one or more vignettes that will +constitute the workshop materials
      diff --git a/index.html b/index.html index 6e6081e..0820cea 100644 --- a/index.html +++ b/index.html @@ -120,10 +120,10 @@

      Results of successful deployment

      To use the resulting image:

      -
      docker run -e PASSWORD=<choose_a_password_for_rstudio> -p 8787:8787 YOURDOCKERIMAGENAME
      +
      docker run -e PASSWORD=<choose_a_password_for_rstudio> -p 8787:8787 YOURDOCKERIMAGENAME

      Once running, navigate to http://localhost:8787/ and then login with rstudio:yourchosenpassword.

      To try with this repository docker image:

      -
      docker run -e PASSWORD=abc -p 8787:8787 ghcr.io/bioconductor/buildabiocworkshop
      +
      docker run -e PASSWORD=abc -p 8787:8787 ghcr.io/bioconductor/buildabiocworkshop

      NOTE: Running docker that uses the password in plain text like above exposes the password to others in a multi-user system (like a shared workstation or compute node). In practice, consider using an environment variable instead of plain text to pass along passwords and other secrets in docker command lines.

      diff --git a/pkgdown.yml b/pkgdown.yml index d3c0a94..2bffe59 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -1,10 +1,10 @@ -pandoc: 2.19.2 +pandoc: 3.1.1 pkgdown: 2.0.7 pkgdown_sha: ~ articles: HOWTO_BUILD_WORKSHOP: HOWTO_BUILD_WORKSHOP.html workshop_example: workshop_example.html -last_built: 2023-04-10T19:24Z +last_built: 2023-08-14T18:49Z urls: reference: https://seandavi.github.io/BuildABiocWorkshop/reference article: https://seandavi.github.io/BuildABiocWorkshop/articles