Merge branch 'devel'

Author: DominikRafacz

NEWS.md

@@ -9,8 +9,8 @@
 * `write_fasta()` and `find_motifs()` accept `data.frame` arguments now; sequences and their names are taken from specified two columns
 * more descriptive error messages for non-existing generics that print out classes of the first parameter
 
-## Fixed-ish:
-* return to autoexported `Rcpp` catch declaration
+## Fixed:
+* return to automatically exported `Rcpp` catch declaration
 
 ## Quality of code stuff:
 * added tests and adjusted vignettes for the changes

README.Rmd

@@ -17,7 +17,6 @@ knitr::opts_chunk$set(
 <!-- badges: start -->
 [![CRAN_Status_Badge](http://www.r-pkg.org/badges/version/tidysq)](https://cran.r-project.org/package=tidysq)
   [![Github Actions Build Status](https://github.com/BioGenies/tidysq/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/BioGenies/tidysq/actions)
-  [![codecov.io](https://codecov.io/github/BioGenies/tidysq/coverage.svg?branch=master)](https://codecov.io/github/BioGenies/tidysq?branch=master) 
   [![Lifecycle: experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental)
 <!-- badges: end -->
 

README.md

@@ -6,7 +6,6 @@
 [![CRAN_Status_Badge](http://www.r-pkg.org/badges/version/tidysq)](https://cran.r-project.org/package=tidysq)
 [![Github Actions Build
 Status](https://github.com/BioGenies/tidysq/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/BioGenies/tidysq/actions)
-[![codecov.io](https://codecov.io/github/BioGenies/tidysq/coverage.svg?branch=master)](https://codecov.io/github/BioGenies/tidysq?branch=master)
 [![Lifecycle:
 experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental)
 <!-- badges: end -->
@@ -17,11 +16,11 @@ experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](h
 sequences (including amino acid and nucleic acid – e.g. RNA, DNA –
 sequences). Two major features of this package are:
 
--   effective compression of sequence data, allowing to fit larger
-    datasets in **R**,
+- effective compression of sequence data, allowing to fit larger
+  datasets in **R**,
 
--   compatibility with most of `tidyverse` universe, especially `dplyr`
-    and `vctrs` packages, making analyses *tidier*.
+- compatibility with most of `tidyverse` universe, especially `dplyr`
+  and `vctrs` packages, making analyses *tidier*.
 
 ## Getting started
 
@@ -70,7 +69,7 @@ sqibble
 #>  8 VHPQKLVFF <15> AMY24|HABP2|Amyloid beta A4 peptide
 #>  9 VHHPKLVFF <15> AMY25|HABP3|Amyloid beta A4 peptide
 #> 10 VHHQPLVFF <15> AMY26|HABP4|Amyloid beta A4 peptide
-#> # … with 411 more rows
+#> # ℹ 411 more rows
 
 sq_ami <- sqibble$sq
 sq_ami
@@ -156,7 +155,7 @@ sqibble %>%
 #>  8 VHHQEKLVF <16> AMY35|HABP13|Amyloid beta A4 peptide     16
 #>  9 VHHQEKLVF <16> AMY36|HABP14|Amyloid beta A4 peptide     16
 #> 10 KKLVFFAED  <9> AMY37|HABP15|Amyloid beta A4 peptide      9
-#> # … with 14 more rows
+#> # ℹ 14 more rows
 ```
 
 ## Citation

cran-comments.md

@@ -1,11 +1,6 @@
-## Test environments
-* local R installation, R 4.1.0
-* ubuntu 16.04 (on travis-ci), R 4.1.0
-* win-builder (devel)
-
 ## R CMD check results
 
-0 errors | 0 warnings | 1 note
+0 errors | 0 warnings | 0 notes
 
 * This is a resubmission.
-* Fixed the problem with deprecated usage of iterator
+* Fixed issues related to new implementations of set operations on R-devel