From 3efecf02a6d816821251d3c4ea047d005235358e Mon Sep 17 00:00:00 2001 From: Roberto Vera Alvarez Date: Fri, 7 Sep 2018 17:50:55 -0400 Subject: [PATCH 1/4] Adding FastQC 0.11.7 with conda installer --- fastqc/0.11.7/Dockerfile | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) create mode 100644 fastqc/0.11.7/Dockerfile diff --git a/fastqc/0.11.7/Dockerfile b/fastqc/0.11.7/Dockerfile new file mode 100644 index 000000000..fdfb28d22 --- /dev/null +++ b/fastqc/0.11.7/Dockerfile @@ -0,0 +1,24 @@ +################## BASE IMAGE ###################### +FROM biocontainers/biocontainers:latest + +################## METADATA ###################### +LABEL base_image="biocontainers:latest" +LABEL version="2" +LABEL software="FastQ" +LABEL software.version="0.11.7" +LABEL about.summary="A quality control tool for high throughput sequence data." +LABEL about.home="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/" +LABEL about.documentation="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/" +LABEL about.license_file="https://www.gnu.org/copyleft/gpl.html" +LABEL about.license="SPDX:GPL-3.0" +LABEL extra.identifiers.biotools="fastqc" +LABEL about.tags="General" + +################## MAINTAINER ###################### +MAINTAINER Roberto Vera Alvarez + +RUN conda install fastqc + +WORKDIR /data/ + +CMD ["fastqc"] From 8ccdf90b7ed020995dac6c46ff10cb541dd395c6 Mon Sep 17 00:00:00 2001 From: Roberto Vera Alvarez Date: Fri, 7 Sep 2018 18:30:23 -0400 Subject: [PATCH 2/4] Fixing error on name --- fastqc/0.11.7/Dockerfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/fastqc/0.11.7/Dockerfile b/fastqc/0.11.7/Dockerfile index fdfb28d22..8cba50f13 100644 --- a/fastqc/0.11.7/Dockerfile +++ b/fastqc/0.11.7/Dockerfile @@ -4,7 +4,7 @@ FROM biocontainers/biocontainers:latest ################## METADATA ###################### LABEL base_image="biocontainers:latest" LABEL version="2" -LABEL software="FastQ" +LABEL software="FastQC" LABEL software.version="0.11.7" LABEL about.summary="A quality control tool for high throughput sequence data." LABEL about.home="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/" From aa1f64731b8b8029b3833846b370d7c8340c74da Mon Sep 17 00:00:00 2001 From: Roberto Vera Alvarez Date: Fri, 7 Sep 2018 18:32:15 -0400 Subject: [PATCH 3/4] Fixing error on name --- fastqc/0.11.7/Dockerfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/fastqc/0.11.7/Dockerfile b/fastqc/0.11.7/Dockerfile index 8cba50f13..677ba1786 100644 --- a/fastqc/0.11.7/Dockerfile +++ b/fastqc/0.11.7/Dockerfile @@ -4,7 +4,7 @@ FROM biocontainers/biocontainers:latest ################## METADATA ###################### LABEL base_image="biocontainers:latest" LABEL version="2" -LABEL software="FastQC" +LABEL software="FASTQC" LABEL software.version="0.11.7" LABEL about.summary="A quality control tool for high throughput sequence data." LABEL about.home="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/" From c21d2f0851887367dfbd93abcd789c73f739f706 Mon Sep 17 00:00:00 2001 From: Roberto Vera Alvarez Date: Fri, 7 Sep 2018 18:33:40 -0400 Subject: [PATCH 4/4] Fixing error on name --- fastqc/0.11.7/Dockerfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/fastqc/0.11.7/Dockerfile b/fastqc/0.11.7/Dockerfile index 677ba1786..86d1b51bc 100644 --- a/fastqc/0.11.7/Dockerfile +++ b/fastqc/0.11.7/Dockerfile @@ -4,7 +4,7 @@ FROM biocontainers/biocontainers:latest ################## METADATA ###################### LABEL base_image="biocontainers:latest" LABEL version="2" -LABEL software="FASTQC" +LABEL software="fastqc" LABEL software.version="0.11.7" LABEL about.summary="A quality control tool for high throughput sequence data." LABEL about.home="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/"