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bowtie-1.2.1.1 fails w/ SIGPROF and Python 2.7.12 #68

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Gracklewolf opened this issue Nov 1, 2017 · 0 comments
Open

bowtie-1.2.1.1 fails w/ SIGPROF and Python 2.7.12 #68

Gracklewolf opened this issue Nov 1, 2017 · 0 comments

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@Gracklewolf
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I've installed bowtie-1.2.1.1 with our Python 2.7.12 installation on RHEL7. I've seen this weird behavior where bowtie --version can be run fine several times in a row, but then suddenly crashes with a SIGPROF (Profiling timer expired) from the kernel. This does never occurs with Python 2.5 that comes with the OS. Any explanation? bowtie2 appears to run fine under Python 2.7.12.
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@Gracklewolf