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Copy pathverified_interactions.csv
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149 lines (149 loc) · 10.6 KB
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ArcZ;STM1682;tpx;NC_003197;Papenfort:Said:Welsink:Speci_and_pleio:2009
ArcZ;STM2970;sdaC;NC_003197;Papenfort:Said:Welsink:Speci_and_pleio:2009
ArcZ;STM3216;-;NC_003197;Papenfort:Said:Welsink:Speci_and_pleio:2009
ArcZ;b1892;flhD;NC_000913;De_Lay_Gottesman-compl_netwo_small-2012
ArcZ;b2741;rpoS;NC_000913;Mandin:Gottesman:Integ_anaer_sensi:2010
ArcZ;b3546;eptB;NC_000913;Moon_Six_Lee-Compl_trans_and-2013
ChiX;STM0687;ybfM/chiP;NC_003197;Figueroa-Bossi:Valentini:Malleret:Caugh_its_own:2009
ChiX;STM1313;celB;NC_003197;Figueroa-Bossi:Valentini:Malleret:Caugh_its_own:2009
ChiX;b0619;dpiB/citA;NC_000913;Mandin:Gottesman:genet_appro_for:2009
ChiX;b0681;chiP;NC_000913;Rasmussen:Johansen:Nielsen:conse_small_RNA:2009
ChiX;b1737;chbC;NC_000913;Overgaard:Johansen:Moller-Jensen:Switc_off_small:2009
CyaR;STM0833;ompX;NC_003197;Papenfort:Pfeiffer:Lucchini:Syste_delet_Salmo:2008
CyaR;b0723;sdhA;NC_000913;Wright_Richter_Papenfort-Compa_genom_boost-PNAS2013
CyaR;b0814;ompX;NC_000913;De_Lay:Gottesman:The_Crp_small:2009
CyaR;b1740;nadE;NC_000913;De_Lay:Gottesman:The_Crp_small:2009
CyaR;b1824;yobF;NC_000913;Wright_Richter_Papenfort-Compa_genom_boost-PNAS2013
CyaR;b2416;ptsI;NC_000913;Wright_Richter_Papenfort-Compa_genom_boost-PNAS2013
CyaR;b2666;yqaE;NC_000913;De_Lay:Gottesman:The_Crp_small:2009
CyaR;b2687;luxS;NC_000913;De_Lay:Gottesman:The_Crp_small:2009
DsrA;b1237;hns;NC_000913;Lease:Cusick:Belfort:Ribor_Esche_coli:PNAS1998
DsrA;b2741;rpoS;NC_000913;Lease:Cusick:Belfort:Ribor_Esche_coli:PNAS1998
DsrA;b3251;mreB;NC_000913;Cayrol_Fortas_Martret-Ribor_the_bacte-2015
FnrS;b0723;sdhA;NC_000913;Wright_Richter_Papenfort-Compa_genom_boost-PNAS2013
FnrS;b0755;gpmA;NC_000913;Durand:Storz:Repro_anaer_metab:2010
FnrS;b0887;cydD;NC_000913;Boysen:Moller-Jensen:Kallipolitis:Trans_regul_gene:JBC2010
FnrS;b1107;nagZ;NC_000913;Wright_Richter_Papenfort-Compa_genom_boost-PNAS2013
FnrS;b1479;maeA;NC_000913;Durand:Storz:Repro_anaer_metab:2010
FnrS;b1531;marA;NC_000913;Wright_Richter_Papenfort-Compa_genom_boost-PNAS2013
FnrS;b1656;sodB;NC_000913;Boysen:Moller-Jensen:Kallipolitis:Trans_regul_gene:JBC2010
FnrS;b1841;yobA;NC_000913;Boysen:Moller-Jensen:Kallipolitis:Trans_regul_gene:JBC2010
FnrS;b2153;folE;NC_000913;Durand:Storz:Repro_anaer_metab:2010
FnrS;b2303;folX;NC_000913;Durand:Storz:Repro_anaer_metab:2010
FnrS;b2531;iscR;NC_000913;Wright_Richter_Papenfort-Compa_genom_boost-PNAS2013
FnrS;b3829;metE;NC_000913;Boysen:Moller-Jensen:Kallipolitis:Trans_regul_gene:JBC2010
FnrS;b3908;sodA;NC_000913;Boysen:Moller-Jensen:Kallipolitis:Trans_regul_gene:JBC2010
GcvB;STM0002;thrA;NC_003197;Sharma:Papenfort:Pernitzsch:Perva_post_contr:2011
GcvB;STM0245;metQ;NC_003197;Sharma:Papenfort:Pernitzsch:Perva_post_contr:2011
GcvB;STM0399;brnQ;NC_003197;Sharma:Papenfort:Pernitzsch:Perva_post_contr:2011
GcvB;STM0602;ybdH;NC_003197;Sharma:Papenfort:Pernitzsch:Perva_post_contr:2011
GcvB;STM0665;gltI;NC_003197;Sharma:Darfeuille:Plantinga:small_RNA_regul:2007
GcvB;STM0959;lrp;NC_003197;Sharma:Papenfort:Pernitzsch:Perva_post_contr:2011
GcvB;STM1299;gdhA;NC_003197;Sharma:Papenfort:Pernitzsch:Perva_post_contr:2011
GcvB;STM1452;tppB;NC_003197;Sharma:Papenfort:Pernitzsch:Perva_post_contr:2011
GcvB;STM1746;oppA;NC_003197;Sharma:Darfeuille:Plantinga:small_RNA_regul:2007
GcvB;STM2355;argT;NC_003197;Sharma:Darfeuille:Plantinga:small_RNA_regul:2007
GcvB;STM2526;ndk;NC_003197;Sharma:Papenfort:Pernitzsch:Perva_post_contr:2011
GcvB;STM3062;serA;NC_003197;Sharma:Papenfort:Pernitzsch:Perva_post_contr:2011
GcvB;STM3064;iciA;NC_003197;Sharma:Papenfort:Pernitzsch:Perva_post_contr:2011
GcvB;STM3225;ygjU/sstT;NC_003197;Sharma:Papenfort:Pernitzsch:Perva_post_contr:2011
GcvB;STM3564;livK;NC_003197;Sharma:Darfeuille:Plantinga:small_RNA_regul:2007
GcvB;STM3567;livJ;NC_003197;Sharma:Darfeuille:Plantinga:small_RNA_regul:2007
GcvB;STM3630;dppA;NC_003197;Sharma:Darfeuille:Plantinga:small_RNA_regul:2007
GcvB;STM3903;ilvE;NC_003197;Sharma:Papenfort:Pernitzsch:Perva_post_contr:2011
GcvB;STM3909;ilvC;NC_003197;Sharma:Papenfort:Pernitzsch:Perva_post_contr:2011
GcvB;STM3930;yifK;NC_003197;Yang_Figueroa-Bossi_Bossi-Trans_enhan_ACA-2014
GcvB;STM4351;-;NC_003197;Sharma:Darfeuille:Plantinga:small_RNA_regul:2007
GcvB;STM4398;cycA;NC_003197;Sharma:Papenfort:Pernitzsch:Perva_post_contr:2011
GcvB;b1040;csgD;NC_000913;Jorgensen_Nielsen_Boysen-Small_regul_RNAs-2012
GcvB;b1130;phoP;NC_000913;Coornaert_Chiaruttini_Springer-Post_contr_the-2013
GcvB;b3089;sstT;NC_000913;Pulvermacher:Stauffer:Stauffer:The_small_RNA:2009
GcvB;b4208;cycA;NC_000913;Pulvermacher:Stauffer:Stauffer:Role_the_sRNA:2009
MicA;STM4231;lamB;NC_003197;Bossi:Figueroa-Bossi:small_RNA_downr:2007
MicA;b0411;tsx;NC_000913;Gogol:Rhodius:Papenfort:Small_RNAs_endow:PNAS2011
MicA;b0814;ompX;NC_000913;Gogol:Rhodius:Papenfort:Small_RNAs_endow:PNAS2011
MicA;b0957;ompA;NC_000913;Udekwu:Darfeuille:Vogel:Hfq_regul_OmpA:2005
MicA;b1130;phoP;NC_000913;Coornaert:Lu:Mandin:MicA_sRNA_links:2010
MicC;STM1572;ompD;NC_003197;Pfeiffer:Papenfort:Lucchini:Codin_seque_targe:2009
MicC;b2215;ompC;NC_000913;Chen:Zhang:Blyn:MicC_secon_small:2004
MicF;STM0366;yahO;NC_003197;Corcoran:Podkaminski:Papenfort:Super_GFP_repor:2012
MicF;STM0959;lrp;NC_003197;Corcoran:Podkaminski:Papenfort:Super_GFP_repor:2012
MicF;STM1328;lpxR;NC_003197;Corcoran:Podkaminski:Papenfort:Super_GFP_repor:2012
MicF;b0241;phoE;NC_000913;Holmqvist:Unoson:Reimegard:mixed_doubl_negat:2012
MicF;b0889;lrp;NC_000913;Holmqvist:Unoson:Reimegard:mixed_doubl_negat:2012
MicF;b0929;ompF;NC_000913;Suzuki_Ueguchi_Mizuno-regul_OmpF_expre-1996
MicF;b3912;cpxR;NC_000913;Holmqvist:Unoson:Reimegard:mixed_doubl_negat:2012
OxyS;b1892;flhD;NC_000913;De_Lay_Gottesman-compl_netwo_small-2012
OxyS;b2731;fhlA;NC_000913;Altuvia_Zhang_Argaman-The_Esche_coli-1998
RprA;b1040;csgD;NC_000913;Mika_Busse_Possling-Targe_csgD_the-2012
RprA;b1341;ydaM;NC_000913;Mika_Busse_Possling-Targe_csgD_the-2012
RprA;b2741;rpoS;NC_000913;Majdalani:Hernandez:Gottesman:Regul_and_mode:2002
RybB;STM0413;tsx;NC_003197;Papenfort:Bouvier:Mika:Evide_for_auton:PNAS2010
RybB;STM0687;ybfM/chiP;NC_003197;Balbontin:Fiorini:Figueroa-Bossi:Recog_hepta_seed:2010
RybB;STM0999;ompF;NC_003197;Papenfort:Bouvier:Mika:Evide_for_auton:PNAS2010
RybB;STM1070;ompA;NC_003197;Papenfort:Bouvier:Mika:Evide_for_auton:PNAS2010
RybB;STM1473;ompN;NC_003197;Bouvier:Sharma:Mika:Small_RNA_bindi:2008
RybB;STM1530;-;NC_003197;Wright:Thesis:2012
RybB;STM1572;ompD;NC_003197;Papenfort:Bouvier:Mika:Evide_for_auton:PNAS2010
RybB;STM1732;ompW;NC_003197;Papenfort:Bouvier:Mika:Evide_for_auton:PNAS2010
RybB;STM1995;ompS;NC_003197;Papenfort:Bouvier:Mika:Evide_for_auton:PNAS2010
RybB;STM2267;ompC;NC_003197;Papenfort:Bouvier:Mika:Evide_for_auton:PNAS2010
RybB;STM2391;fadL;NC_003197;Papenfort:Bouvier:Mika:Evide_for_auton:PNAS2010
RybB;b0081;mraZ;NC_000913;Wright_Richter_Papenfort-Compa_genom_boost-PNAS2013
RybB;b0721;sdhC;NC_000913;Desnoyers_Masse-Nonca_repre_trans-2012
RybB;b0805;fiu;NC_000913;Gogol:Rhodius:Papenfort:Small_RNAs_endow:PNAS2011
RybB;b1256;ompW;NC_000913;Johansen:Rasmussen:Overgaard:Conse_small_non:JMB2006
RybB;b2215;ompC;NC_000913;Johansen:Rasmussen:Overgaard:Conse_small_non:JMB2006
RybB;b2594;rluD;NC_000913;Gogol:Rhodius:Papenfort:Small_RNAs_endow:PNAS2011
RyhB;b0118;acnB;NC_000913;Benjamin_Masse-The_iron_aconi-NAR2014
RyhB;b0156;erpA;NC_000913;Wright_Richter_Papenfort-Compa_genom_boost-PNAS2013
RyhB;b0288;ykgJ;NC_000913;Wang_Rennie_Liu-Ident_bacte_sRNA-NAR2015
RyhB;b0592;fepB;NC_000913;Wang_Rennie_Liu-Ident_bacte_sRNA-NAR2015
RyhB;b0683;fur;NC_000913;Vecerek:Moll:Blasi:Contr_Fur_synth:2007
RyhB;b0721;sdhC;NC_000913;Desnoyers_Masse-Nonca_repre_trans-2012
RyhB;b0723;sdhA;NC_000913;Wright_Richter_Papenfort-Compa_genom_boost-PNAS2013
RyhB;b0894;dmsA;NC_000913;Wang_Rennie_Liu-Ident_bacte_sRNA-NAR2015
RyhB;b1107;nagZ;NC_000913;Wright_Richter_Papenfort-Compa_genom_boost-PNAS2013
RyhB;b1200;dhaK;NC_000913;Wang_Rennie_Liu-Ident_bacte_sRNA-NAR2015
RyhB;b1452;yncE;NC_000913;Wang_Rennie_Liu-Ident_bacte_sRNA-NAR2015
RyhB;b1531;marA;NC_000913;Wright_Richter_Papenfort-Compa_genom_boost-PNAS2013
RyhB;b1588;ynfF;NC_000913;Wang_Rennie_Liu-Ident_bacte_sRNA-NAR2015
RyhB;b1612;fumA;NC_000913;Prevost:Desnoyers:Jacques:Small_RNA_mRNA:2011
RyhB;b1656;sodB;NC_000913;Vecerek:Moll:Afonyushkin:Inter_the_RNA:2003
RyhB;b1778;msrB;NC_000913;Bos_Duverger_Thouvenot-The_sRNA_RyhB-2013
RyhB;b1981;shiA;NC_000913;Prevost:Salvail:Desnoyers:The_small_RNA:2007
RyhB;b2069;yegD;NC_000913;Wang_Rennie_Liu-Ident_bacte_sRNA-NAR2015
RyhB;b2155;cirA;NC_000913;Wang_Rennie_Liu-Ident_bacte_sRNA-NAR2015
RyhB;b2206;napA;NC_000913;Wang_Rennie_Liu-Ident_bacte_sRNA-NAR2015
RyhB;b2530;iscS;NC_000913;Desnoyers:Morissette:Prevost:Small_RNA_diffe:2009
RyhB;b3365;nirB;NC_000913;Wright_Richter_Papenfort-Compa_genom_boost-PNAS2013
RyhB;b3607;cysE;NC_000913;Salvail:Lanthier-Bourbonnais:Sobota:small_RNA_promo:PNAS2010
RyhB;b3942;katG;NC_000913;Wang_Rennie_Liu-Ident_bacte_sRNA-NAR2015
RyhB;b4070;nrfA;NC_000913;Wang_Rennie_Liu-Ident_bacte_sRNA-NAR2015
RyhB;b4122;fumB;NC_000913;Wang_Rennie_Liu-Ident_bacte_sRNA-NAR2015
SgrS;STM2945;sopD;NC_003197;Papenfort:Podkaminski:Hinton:The_ances_SgrS:PNAS2012
SgrS;STM3962;yigL;NC_003197;Papenfort_Sun_Miyakoshi-Small_RNA_activ-2013
SgrS;b1101;ptsG;NC_000913;Kawamoto:Koide:Morita:Base_requi_for:2006
SgrS;b1817;manX;NC_000913;Rice:Vanderpool:The_small_RNA:NAR2011
SgrS;b2416;ptsI;NC_000913;Wright_Richter_Papenfort-Compa_genom_boost-PNAS2013
Spot42;STM2190;mglB;NC_003197;Holmqvist_Wright_Li-Globa_RNA_recog-2016
Spot42;b0039;caiA;NC_000913;Beisel_Updegrove_Janson-Multi_facto_dicta-2012
Spot42;b0720;gltA;NC_000913;Beisel:Storz:The_Base_RNA:2011
Spot42;b0721;sdhC;NC_000913;Desnoyers_Masse-Nonca_repre_trans-2012
Spot42;b0728;sucC;NC_000913;Wright_Richter_Papenfort-Compa_genom_boost-PNAS2013
Spot42;b0757;galK;NC_000913;Moller:Franch:Udesen:Spot_RNA_media:2002
Spot42;b1136;icd;NC_000913;Wright_Richter_Papenfort-Compa_genom_boost-PNAS2013
Spot42;b1302;puuE;NC_000913;Beisel_Updegrove_Janson-Multi_facto_dicta-2012
Spot42;b1398;paaK;NC_000913;Beisel_Updegrove_Janson-Multi_facto_dicta-2012
Spot42;b1761;gdhA;NC_000913;Wright_Richter_Papenfort-Compa_genom_boost-PNAS2013
Spot42;b1901;araF;NC_000913;Chen_Gottesman-Spot_sRNA_regul-2016
Spot42;b2221;atoD;NC_000913;Beisel_Updegrove_Janson-Multi_facto_dicta-2012
Spot42;b2702;srlA;NC_000913;Beisel:Storz:The_Base_RNA:2011
Spot42;b2715;ascF;NC_000913;Beisel_Updegrove_Janson-Multi_facto_dicta-2012
Spot42;b2801;fucP;NC_000913;Beisel_Updegrove_Janson-Multi_facto_dicta-2012
Spot42;b2802;fucI;NC_000913;Beisel:Storz:The_Base_RNA:2011
Spot42;b3224;nanT;NC_000913;Beisel_Updegrove_Janson-Multi_facto_dicta-2012
Spot42;b3566;xylF;NC_000913;Beisel:Storz:The_Base_RNA:2011
Spot42;b3927;glpF;NC_000913;Beisel_Updegrove_Janson-Multi_facto_dicta-2012
Spot42;b3962;sthA;NC_000913;Beisel:Storz:The_Base_RNA:2011
Spot42;b4311;nanC;NC_000913;Beisel:Storz:The_Base_RNA:2011