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Pipfile
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[[source]]
url = "https://pypi.org/simple"
verify_ssl = true
name = "pypi"
[packages]
absl-py = "==1.4.0"
aiohttp = "==3.9.1"
aiosignal = "==1.3.1"
anndata = "==0.8.0"
arboreto = "==0.1.6"
async-timeout = "==4.0.3"
attrs = "==22.1.0"
autoflake = "==2.1.1"
autopage = "==0.5.1"
bio = "==1.5.6"
biopython = "==1.81"
biothings-client = "==0.2.6"
biotite = "==0.37.0"
black = "==22.3.0"
bokeh = "==2.4.3"
cachetools = "==5.3.0"
causal-learn = "==0.1.3.3"
causalbench = "==1.0.0"
causaldag = "==0.1a163"
cdt = "==0.6.0"
certifi = "==2022.6.15"
cfgv = "==3.3.1"
charset-normalizer = "==2.1.0"
class-resolver = "==0.3.10"
click = "==8.0.4"
click-default-group = "==1.2.2"
cliff = "==3.10.1"
cloudpickle = "==2.1.0"
cmaes = "==0.8.2"
cmake = "==3.24.0"
cmd2 = "==2.4.2"
colorlog = "==6.6.0"
conditional-independence = "==0.1a6"
cycler = "==0.11.0"
cython = "==0.29.32"
dask = "==2023.3.1"
databricks-cli = "==0.17.1"
dataclasses = "==0.6"
dataclasses-json = "==0.5.7"
datatable = "==1.0.0"
decorator = "==5.1.1"
deprecated = "==1.2.13"
distlib = "==0.3.6"
distributed = "==2023.3.1"
docdata = "==0.0.3"
docker = "==5.0.3"
easydict = "==1.10"
einops = "==0.4.1"
et-xmlfile = "==1.1.0"
filelock = "==3.8.0"
flask = "==2.2.2"
fonttools = "==4.34.4"
frozendict = "==2.3.6"
frozenlist = "==1.3.3"
fsspec = "==2023.3.0"
future = "==0.18.3"
gdown = "==4.6.6"
gies = "==0.0.1"
google-auth = "==2.18.1"
google-auth-oauthlib = "==1.0.0"
gprofiler-official = "==1.0.0"
gputil = "==1.4.0"
graphical-model-learning = "==0.1a8"
graphical-models = "==0.1a19"
graphtools = "==1.5.3"
graphviz = "==0.20.1"
grpcio = "==1.50.0"
gunicorn = "==20.1.0"
h5py = "==3.8.0"
heapdict = "==1.0.1"
identify = "==2.5.21"
idna = "==3.3"
igraph = "==0.10.4"
ilock = "==1.0.3"
ipdb = "==0.13.13"
isort = "==5.10.1"
itsdangerous = "==2.1.2"
joblib = "==1.1.0"
jsonschema = "==4.17.0"
kiwisolver = "==1.4.4"
lazypredict = "==0.2.12"
lightgbm = "==3.3.3"
lightning-utilities = "==0.10.0"
littleballoffur = "==2.1.12"
littleutils = "==0.2.2"
llvmlite = "==0.39.1"
lmdb = "==1.4.1"
locket = "==1.0.0"
lz4 = "==4.3.2"
magic-impute = "==3.0.0"
markdown = "==3.4.3"
marshmallow = "==3.17.0"
marshmallow-enum = "==1.5.1"
matplotlib = "==3.5.2"
mlflow = "==1.28.0"
modal = "==0.4.1"
more-click = "==0.1.1"
more-itertools = "==8.14.0"
msgpack = "==1.0.4"
multidict = "==6.0.4"
mygene = "==3.2.2"
mypy-extensions = "==0.4.3"
natsort = "==8.3.1"
networkit = "==7.1"
networkx = "==2.8.5"
nodeenv = "==1.7.0"
numba = "==0.56.4"
numexpr = "==2.8.4"
numpy = "==1.23.1"
ogb = "==1.3.6"
openpyxl = "==3.1.2"
opt-einsum = "==3.3.0"
optuna = "==2.10.1"
outdated = "==0.2.2"
pandas = "==1.3.5"
partd = "==1.3.0"
patsy = "==0.5.3"
pbr = "==5.9.0"
pexpect = "==4.8.0"
pgmpy = "==0.1.21"
pillow = "==9.2.0"
platformdirs = "==2.5.4"
plotly = "==5.12.0"
pooch = "==1.7.0"
portalocker = "==2.7.0"
pre-commit = "==2.19.0"
pre-commit-hooks = "==4.2.0"
prettytable = "==3.3.0"
progressbar2 = "==4.2.0"
prometheus-flask-exporter = "==0.20.3"
protobuf = "==3.20.1"
psutil = "==5.9.4"
ptyprocess = "==0.7.0"
pyarrow = "==11.0.0"
pyasn1 = "==0.5.0"
pyasn1-modules = "==0.3.0"
pydot = "==1.4.2"
pyflakes = "==3.0.1"
pygam = "==0.8.0"
pygments = "==2.14.0"
pygsp = "==0.5.1"
pykeen = "==1.9.0"
pynndescent = "==0.5.8"
pyparsing = "==3.0.9"
pyperclip = "==1.8.2"
pyrsistent = "==0.19.2"
pysocks = "==1.7.1"
pystow = "==0.4.6"
python-igraph = "==0.10.4"
python-louvain = "==0.16"
python-utils = "==3.5.2"
pytorch-lightning = "==2.0.0"
pytz = "==2022.1"
querystring-parser = "==1.2.4"
ray = "==2.4.0"
rdkit-pypi = "==2022.3.4"
requests = "==2.28.1"
requests-oauthlib = "==1.3.1"
rexmex = "==0.1.0"
rsa = "==4.9"
scanpy = "==1.9.3"
scikit-learn = "==1.1.2"
scikit-multilearn = "==0.2.0"
scipy = "==1.9.0"
scprep = "==1.2.2"
seaborn = "==0.11.2"
session-info = "==1.0.0"
six = "==1.16.0"
sklearn = "==0.0"
skorch = "==0.12.0"
skrebate = "==0.62"
slingpy = "==0.2.12"
sortedcontainers = "==2.4.0"
sqlparse = "==0.4.2"
stdlib-list = "==0.8.0"
stevedore = "==4.0.0"
tabulate = "==0.8.10"
tasklogger = "==1.2.0"
tblib = "==1.7.0"
tensorboard = "==2.13.0"
tensorboard-data-server = "==0.7.0"
texttable = "==1.6.4"
threadpoolctl = "==3.1.0"
tokenizers = "==0.13.2"
toml = "==0.10.2"
toolz = "==0.12.0"
torch = "==1.11.0+cu113"
torch-cluster = "==1.6.0"
torch-geometric = "==2.0.4"
torch-max-mem = "==0.0.2"
torch-ppr = "==0.0.8"
torch-scatter = "==2.0.9"
torch-sparse = "==0.6.14"
torchaudio = "==0.11.0+cu113"
torcheval = "==0.0.7"
torchmetrics = "==1.3.0"
torchvision = "==0.12.0+cu113"
tqdm = "==4.66.1"
typing = "==3.7.4.3"
typing-inspect = "==0.7.1"
typing-extensions = "==4.3.0"
umap-learn = "==0.5.3"
urllib3 = "==1.26.11"
virtualenv = "==20.16.7"
wcwidth = "==0.2.5"
werkzeug = "==2.2.2"
wrapt = "==1.15.0"
xgboost = "==1.7.2"
xxhash = "==3.2.0"
yarl = "==1.9.4"
zict = "==2.2.0"
zipp = "==3.8.1"
[dev-packages]
[requires]
python_version = "3.9"