runAnalysisOnMultipleMice.py

import tools.extractSaveData as extractSaveData
#import tools.dataAnalysis as dataAnalysis
#import tools.openCVImageProcessingTools as openCVImageProcessingTools
import pdb
import os
import subprocess
import time
import pickle
import multiprocessing

saveDir = 'scriptRunHistory/'

mouseList = [#'180107_m27',
             #'180107_f28',
             #'180107_f29',
             #'171227_m96',
             #'171215_m2',
             #'180112_m33',
             #'180112_f36',
             #'180124_f1',
             #'180131_f2',
             #'180201_f48',
             #'180201_f49',
             #'180203_f40',
             #'180203_f41',
             #'180201_m42',
             #'180201_m43',
             #'180201_m44',
             #'180201_m45',
             '180822_m03',\
             '180822_f04',\
             '180822_f09',\
             '180824_f14',\
             '180824_f13',

             ]

script = 'getCalciumTracesDetermineRois'
expDate = '181017'

commandHist = []

# loop over mice
for m in mouseList:
    eSD         = extractSaveData.extractSaveData(m,expDate)
    (recordings,dataFolder) = eSD.getRecordingsList(m) # get recordings for specific mouse and date
    # loop over recording dates of the current mouse
    for n in range(len(recordings)):
        # two or more recordings on the same day appear as two entries in recordings, can be skipped here
        if (n>0) and (recordings[n-1][1] == recordings[n][1]):
            continue
        else:
            comandString = 'python %s.py -m %s -d %s' % (script,m,recordings[n][1])
            print(comandString)
            #tp = os.system('pwd')
            #print tp
            (out,err) = subprocess.getstatusoutput(comandString)
            commandHist.append([comandString,out,err])
            #pdb.set_trace()

ttt = time.strftime("%y-%m-%d")
sname = os.path.basename(__file__)
pickle.dump( commandHist, open( saveDir+"%s_%s_script-%s.p" % (ttt,sname,script), "wb" ) )