VEP annotated and VCF, convereted by mskcc/vcf2maf
1 Hugo_Symbol
2 Entrez_Gene_Id
3 Center
4 NCBI_Build
5 Chromosome
6 Start_Position
7 End_Position
8 Strand
9 Variant_Classification
10 Variant_Type
11 Reference_Allele
12 Tumor_Seq_Allele1
13 Tumor_Seq_Allele2
14 dbSNP_RS
15 dbSNP_Val_Status
16 Tumor_Sample_Barcode
17 Matched_Norm_Sample_Barcode
18 Match_Norm_Seq_Allele1
19 Match_Norm_Seq_Allele2
20 Tumor_Validation_Allele1
21 Tumor_Validation_Allele2
22 Match_Norm_Validation_Allele1
23 Match_Norm_Validation_Allele2
24 Verification_Status
25 Validation_Status
26 Mutation_Status
27 Sequencing_Phase
28 Sequence_Source
29 Validation_Method
30 Score
31 BAM_File
32 Sequencer
33 Tumor_Sample_UUID
34 Matched_Norm_Sample_UUID
35 HGVSc
36 HGVSp
37 HGVSp_Short
38 Transcript_ID
39 Exon_Number
40 t_depth
41 t_ref_count
42 t_alt_count
43 n_depth
44 n_ref_count
45 n_alt_count
46 all_effects
47 Allele
48 Gene
49 Feature
50 Feature_type
51 Consequence
52 cDNA_position
53 CDS_position
54 Protein_position
55 Amino_acids
56 Codons
57 Existing_variation
58 ALLELE_NUM
59 DISTANCE
60 STRAND_VEP
61 SYMBOL
62 SYMBOL_SOURCE
63 HGNC_ID
64 BIOTYPE
65 CANONICAL
66 CCDS
67 ENSP
68 SWISSPROT
69 TREMBL
70 UNIPARC
71 RefSeq
72 SIFT
73 PolyPhen
74 EXON
75 INTRON
76 DOMAINS
77 AF
78 AFR_AF
79 AMR_AF
80 ASN_AF
81 EAS_AF
82 EUR_AF
83 SAS_AF
84 AA_AF
85 EA_AF
86 CLIN_SIG
87 SOMATIC
88 PUBMED
89 MOTIF_NAME
90 MOTIF_POS
91 HIGH_INF_POS
92 MOTIF_SCORE_CHANGE
93 IMPACT
94 PICK
95 VARIANT_CLASS
96 TSL
97 HGVS_OFFSET
98 PHENO
99 MINIMISED
100 ExAC_AF
101 ExAC_AF_AFR
102 ExAC_AF_AMR
103 ExAC_AF_EAS
104 ExAC_AF_FIN
105 ExAC_AF_NFE
106 ExAC_AF_OTH
107 ExAC_AF_SAS
108 GENE_PHENO
109 FILTER
110 flanking_bps
111 variant_id
112 variant_qual
113 ExAC_AF_Adj
114 ExAC_AC_AN_Adj
115 ExAC_AC_AN
116 ExAC_AC_AN_AFR
117 ExAC_AC_AN_AMR
118 ExAC_AC_AN_EAS
119 ExAC_AC_AN_FIN
120 ExAC_AC_AN_NFE
121 ExAC_AC_AN_OTH
122 ExAC_AC_AN_SAS
123 ExAC_FILTER
124 gnomAD_AF
125 gnomAD_AFR_AF
126 gnomAD_AMR_AF
127 gnomAD_ASJ_AF
128 gnomAD_EAS_AF
129 gnomAD_FIN_AF
130 gnomAD_NFE_AF
131 gnomAD_OTH_AF
132 gnomAD_SAS_AF