example_calm_repop not running

[jawadmhoque]

The repop synthesis fails at the summarize step (line 60 in summarize_geography). Not all the unique hh ids in the zone_weights dataframe is there in the incidence_df.

populationsim release:

Name: populationsim
Version: 0.5.1
Summary: Population Synthesis
Home-page: https://github.com/ActivitySim/populationsim

Error message:

Running step 'summarize'
INFO - saving summary table summary_REGION_1
INFO - saving summary table summary_TRACT_aggregate
Traceback (most recent call last):
  File "run_populationsim.py", line 63, in <module>
    pipeline.run(models=steps, resume_after=resume_after)
  File "C:\Users\USJH706661\Anaconda3\envs\popsim_2\lib\site-packages\activitysim\core\pipeline.py", line 617, in run
    run_model(model)
  File "C:\Users\USJH706661\Anaconda3\envs\popsim_2\lib\site-packages\activitysim\core\pipeline.py", line 476, in run_model
    orca.run([step_name])
  File "C:\Users\USJH706661\Anaconda3\envs\popsim_2\lib\site-packages\orca\orca.py", line 2168, in run
    step()
  File "C:\Users\USJH706661\Anaconda3\envs\popsim_2\lib\site-packages\orca\orca.py", line 973, in __call__
    return self._func(**kwargs)
  File "C:\Users\USJH706661\Anaconda3\envs\popsim_2\lib\site-packages\populationsim\steps\summarize.py", line 231, in summarize
    crosswalk_df, weights_df, incidence_df)
  File "C:\Users\USJH706661\Anaconda3\envs\popsim_2\lib\site-packages\populationsim\steps\summarize.py", line 60, in summarize_geography
    incidence = incidence_df.loc[zone_weights[hh_id_col]]
  File "C:\Users\USJH706661\Anaconda3\envs\popsim_2\lib\site-packages\pandas\core\indexing.py", line 931, in __getitem__
    return self._getitem_axis(maybe_callable, axis=axis)
  File "C:\Users\USJH706661\Anaconda3\envs\popsim_2\lib\site-packages\pandas\core\indexing.py", line 1153, in _getitem_axis
    return self._getitem_iterable(key, axis=axis)
  File "C:\Users\USJH706661\Anaconda3\envs\popsim_2\lib\site-packages\pandas\core\indexing.py", line 1093, in _getitem_iterable
    keyarr, indexer = self._get_listlike_indexer(key, axis)
  File "C:\Users\USJH706661\Anaconda3\envs\popsim_2\lib\site-packages\pandas\core\indexing.py", line 1314, in _get_listlike_indexer
    self._validate_read_indexer(keyarr, indexer, axis)
  File "C:\Users\USJH706661\Anaconda3\envs\popsim_2\lib\site-packages\pandas\core\indexing.py", line 1377, in _validate_read_indexer
    raise KeyError(f"{not_found} not in index")
KeyError: '[16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 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1689, 1690, 1691, 1692, 1693, 1694, 1695, 1696, 1697, 1698, 1699, 1700, 1701, 1702, 1703, 1704, 1705, 1706, 1707, 1708, 1709, 1710, 1711, 1712, 1713, 1714, 1715, 1716, 1717, 1718, 1719, 1720, 1721, 1722, 1723, 1724, 1725, 1726, 1727, 1728, 1729, 1730, 1731, 1732, 1733, 1734, 1735, 1736, 1737, 1738, 1739, 1740, 1741, 1742, 1743, 1744, 1745, 1746, 1747, 1748, 1749, 1750, 1751, 1752, 1753, 1754, 1755, 1756, 1757, 1758, 1759, 1760, 1761, 1762, 1763, 1764, 1765, 1766, 1767, 1768, 1769, 1770, 1771, 1772, 1773, 1774, 1775, 1776, 1777, 1778, 1779, 1780, 1781, 1782, 1783, 1784, 1785, 1786, 1787, 1788, 1789, 1790, 1791, 1792, 1793, 1794, 1795, 1796, 1797, 1798, 1799, 1800, 1801, 1802, 1803, 1804, 1805, 1806, 1807] not in index'
Closing remaining open files:output\pipeline.h5...done

[jawadmhoque]

Repop works once I skip the summarize.repop module in the settings file.

[binnympaul]

Hi @jawadmhoque, are you running the example as is, or did you update any of the settings? I noticed the settings.yaml file for example_calm_pop is configured to resume from summarize step: resume_after: summarize
Perhaps try setting it to blank like this resume_after: for it to run through all steps.

[jawadmhoque]

Hi @jawadmhoque, are you running the example as is, or did you update any of the settings? I noticed the settings.yaml file for example_calm_pop is configured to resume from summarize step: resume_after: summarize Perhaps try setting it to blank like this resume_after: for it to run through all steps.

Hey @binnympaul . I am running the example as is. I tried setting the resume_after step to blank and it fails at the repop_setup_data_structures step with a Key Error on households. Here is the command line outputs:

INFO - Read logging configuration from: configs\logging.yaml
INFO - GROUP_BY_INCIDENCE_SIGNATURE: True
INFO - INTEGERIZE_WITH_BACKSTOPPED_CONTROLS: True
INFO - SUB_BALANCE_WITH_FLOAT_SEED_WEIGHTS: False
INFO - meta_control_data: None
INFO - control_file_name: None
INFO - USE_CVXPY: False
INFO - USE_SIMUL_INTEGERIZER: True
INFO - Time to execute open_pipeline : 0.033 seconds (0.0 minutes)
INFO - Time to execute preload_injectables : 0.016 seconds (0.0 minutes)
INFO - #run_model running step input_pre_processor
Running step 'input_pre_processor'
INFO - Using table list: [{'filename': 'repop_control_totals_taz.csv', 'tablename': 'TAZ_control_data'}]
INFO - Reading CSV file data\repop_control_totals_taz.csv
INFO - registering table TAZ_control_data
Time to execute step 'input_pre_processor': 0.00 s
Total time to execute iteration 1 with iteration value None: 0.00 s
INFO - #run_model running step repop_setup_data_structures
Running step 'repop_setup_data_structures'
Traceback (most recent call last):
  File "run_populationsim.py", line 63, in <module>
    pipeline.run(models=steps, resume_after=resume_after)
  File "C:\Users\USJH706661\Anaconda3\envs\popsim_2\lib\site-packages\activitysim\core\pipeline.py", line 617, in run
    run_model(model)
  File "C:\Users\USJH706661\Anaconda3\envs\popsim_2\lib\site-packages\activitysim\core\pipeline.py", line 476, in run_model
    orca.run([step_name])
  File "C:\Users\USJH706661\Anaconda3\envs\popsim_2\lib\site-packages\orca\orca.py", line 2168, in run
    step()
  File "C:\Users\USJH706661\Anaconda3\envs\popsim_2\lib\site-packages\orca\orca.py", line 972, in __call__
    expressions=self._argspec.defaults)
  File "C:\Users\USJH706661\Anaconda3\envs\popsim_2\lib\site-packages\orca\orca.py", line 1131, in _collect_variables
    thing = all_variables[expression]
KeyError: 'households'
Closing remaining open files:output\pipeline.h5...done

But running it with the pipeline from the example_calm output and skipping the summarize step still works. As far as I can understand from here , repop mode starts from the last step of the regular run, which is the summarize step. So shouldn't it be specified like that?

[conrad-mac]

Can confirm I'm getting the same error as @jawadmhoque. And also that the workaround of skipping summarize.repop works for me (keeping in mind that you need to re-copy the h5 file from the original run after the initial crash).

[binnympaul]

@jawadmhoque , @conrad-mac : Thanks for confirming the issue. You are right, the repop run must be configured to resume from the summarize step.

I reviewed the code and settings, and looks like the list of geographies should list only the lowest geography among the sub-seed geographies. This is because the controls are only specified at the lowest geographic level for a repop run and other sub-seed geographies are not available for summaries. The geographies settings in the settings.yaml file can be updated as follows for example_calm_repop:
geographies: [REGION, PUMA, TAZ]

The workaround of skipping summarize.repop also works but will not generate any summaries.

[jawadmhoque]

@jawadmhoque , @conrad-mac : Thanks for confirming the issue. You are right, the repop run must be configured to resume from the summarize step.

I reviewed the code and settings, and looks like the list of geographies should list only the lowest geography among the sub-seed geographies. This is because the controls are only specified at the lowest geographic level for a repop run and other sub-seed geographies are not available for summaries. The geographies settings in the settings.yaml file can be updated as follows for example_calm_repop: geographies: [REGION, PUMA, TAZ]

The workaround of skipping summarize.repop also works but will not generate any summaries.

Confirming that editing the geographic setting to have the lowest geography among the sub-seeds work with the summarize.repop step.

[jawadmhoque]

Updated repop settings lead to null values in the second level geographies. Created new issue #170 .

[bettinardi]

While we are updating the example(s) #90. It looks like we need to resolve the re-pop example and clean up issues #169 and #170.