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NEWS
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CHANGES IN VERSION 1.12.5
-------------------------
o enable RCPP_PARALLEL_USE_TBB=1 on Windows
CHANGES IN VERSION 1.12.4
-------------------------
o fix the compiling issue on ARM64
(see https://github.com/AbbVie-ComputationalGenomics/SAIGEgds/issues/8)
CHANGES IN VERSION 1.12.1
-------------------------
o fix the memory issue because of using deprecated tbb::task_scheduler_init
in RcppParallel
CHANGES IN VERSION 1.6.0
-------------------------
o `seqFitNullGLMM_SPA()` can use imputed dosages directly without
converting the dosages to the best-guess genotypes
o new function `glmmHeritability()` for approximate heritability estimates
CHANGES IN VERSION 1.4.0
-------------------------
o set-based tests: burden, ACAT-V
CHANGES IN VERSION 1.2.2
-------------------------
o update the citation
o work around gcc-10
CHANGES IN VERSION 1.2.0
-------------------------
o `seqAssocGLMM_SPA()` can save to a RDS file
CHANGES IN VERSION 1.0.2
-------------------------
o fix an issue when there is no covariate in the formula (e.g., y ~ 1)
CHANGES IN VERSION 1.0.1
-------------------------
o add a new option for the threshold of missing variant to
`seqAssocGLMM_SPA()`
o change the output column 'AC.alt' to 'mac' in `seqAssocGLMM_SPA()`
o retry model fitting at least 10 times if matrix is singular or not
positive definite, or large variance is observed
CHANGES IN VERSION 1.0.0
-------------------------
o first Bioconductor release
CHANGES IN VERSION 0.99.0 (10-02-2019)
-------------------------
o package submitted to Bioconductor
CHANGES IN VERSION 0.9.10 (08-12-2019)
-------------------------
o SAIGE algorithm implementation for quantitative outcomes
CHANGES IN VERSION 0.9.9 (07-24-2019)
-------------------------
o add a vignette to the package
o the default of random number generator changes in R: "Rounding" was the
default in `RNGkind()` prior to R_3.6.0, but "Rejection" is used in
R (>= v3.6.0). For reproduction of the results created by R (< v3.6.0),
please use `RNGkind("Mersenne-Twister", "Inversion", "Rounding")` in
R (>= v3.6.0)
CHANGES IN VERSION 0.9.7 (06-08-2019)
-------------------------
o seqAssocGLMM_SPA(): load balancing in parallel
CHANGES IN VERSION 0.9.0 (01-07-2019)
-------------------------
o first version of SAIGEgds