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sequences_test.gb
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sequences_test.gb
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LOCUS MH746957 1032 bp RNA linear VRL 20-SEP-2019
DEFINITION UNVERIFIED: Asian prunus virus 3 coat protein-like gene, partial
sequence.
ACCESSION MH746957
VERSION MH746957.1
KEYWORDS UNVERIFIED.
SOURCE Asian prunus virus 3
ORGANISM Asian prunus virus 3
Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae;
Foveavirus; unclassified Foveavirus.
REFERENCE 1 (bases 1 to 1032)
AUTHORS Chen,Y., Sun,P., Li,M., Zhao,M. and Li,Z.
TITLE First report of APV1 and APV3 from apricot in China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1032)
AUTHORS Chen,Y., Sun,P., Li,M., Zhao,M. and Li,Z.
TITLE Direct Submission
JOURNAL Submitted (13-AUG-2018) Inner Mongolia Agricultural University,
College of Agronomy, 306 Zhaowuda Road, Saihan District, Huhhot,
Inner Mongolia 010000, China
COMMENT GenBank staff is unable to verify sequence and/or annotation
provided by the submitter.
##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1032
/organism="Asian prunus virus 3"
/mol_type="genomic RNA"
/host="apricot"
/db_xref="taxon:351428"
/country="China"
/collection_date="10-May-2018"
misc_feature 65..>1032
/note="similar to coat protein"
ORIGIN
1 tcactttagt taggttgagt gtaggtttat tgaaataata gattacttgc ttcaagattt
61 taggatgaca acttctgaaa gggctgccac tacagatgtc gagagcacca ctgtccagac
121 agcttcgacc attgctccgg caagcatacc tgctacacag caggtcactc taccgggatc
181 tttaactgag gccgctacag ctgcgccgac aacaacttcc acgtttcaga gggttgagga
241 ccctttcaga tcaagaccta gtttcactct accgtctctg actggagggt tgggaactct
301 gagctcgaca gcaaccactg cagccacatc aaccacctct gagacaaggc catcgacctt
361 tgaaggatgg cgggagaaac tgaagaataa agacgatatg gcccttcctc gctctgaaat
421 tgaaagtctg ggccagtttg aagctggggg aggatcaaac gaaggaagga gtgttatgag
481 ggttcatggg gtctctccaa gtacaatggt gtatgaagga aaggtagaga ctggagattc
541 tgacttcaat actactggag ttagtttggg atctagacag aggatggtct ttgaagccgc
601 ctgaaggagg gctcagtcaa acattgaggc tgatagggac agcatggctc ctccttttgc
661 ctccggggac cctttttcaa ggcccaaggt gcaggatgtt cagaggtttt catatgagcc
721 cagctcgcca gatgttgcaa ctgctgaaaa catagagtac atacgggctg acctagtgag
781 agccggtgtt cctctgaagg atataacctt tgccatgtgg gacatagcac gtcactgcgc
841 tgatgctgga tcatcagaat ccactgaatt tatcggcacc agcagttatg ggggtagagt
901 tgctaggatg gaaattgcag caattatcaa aaagcacact acactcagaa ggttttgcgg
961 gttctacgct aaaattgtat ggaacatcat gcttgtaact aacataccac catctgggtg
1021 gatgaagaga gg
//
LOCUS MH746955 1031 bp RNA linear VRL 20-SEP-2019
DEFINITION UNVERIFIED: Asian prunus virus 3 coat protein-like gene, partial
sequence.
ACCESSION MH746955
VERSION MH746955.1
KEYWORDS UNVERIFIED.
SOURCE Asian prunus virus 3
ORGANISM Asian prunus virus 3
Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae;
Foveavirus; unclassified Foveavirus.
REFERENCE 1 (bases 1 to 1031)
AUTHORS Chen,Y., Sun,P., Li,M., Zhao,M. and Li,Z.
TITLE First report of APV1 and APV3 from apricot in China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1031)
AUTHORS Chen,Y., Sun,P., Li,M., Zhao,M. and Li,Z.
TITLE Direct Submission
JOURNAL Submitted (13-AUG-2018) Inner Mongolia Agricultural University,
College of Agronomy, 306 Zhaowuda Road, Saihan District, Huhhot,
Inner Mongolia 010000, China
COMMENT GenBank staff is unable to verify sequence and/or annotation
provided by the submitter.
##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1031
/organism="Asian prunus virus 3"
/mol_type="genomic RNA"
/host="apricot"
/db_xref="taxon:351428"
/country="China"
/collection_date="10-May-2018"
misc_feature 65..>1031
/note="similar to coat protein"
ORIGIN
1 tcactttagt taggttgagt gtaggtttat tgaaataata gattacttgc ttcaaggttt
61 taggatgaca acttctgaag gggctgccac tacagatgtc gagagcacca ctgtccagac
121 agcttcgacc attgctccgg caagcatacc tgctacacag caggtcactc taccgggatc
181 tttaactgag gccgctacag ctgcgccgac aacaacttcc acgtttcaga gggttgagga
241 ccctttcaga tcaagaccta gtttcactct accgtctctg actggagggt tgggaactct
301 gagctcgaca gcaaccactg cagccacatc aaccacctct gagacaaggc catcgacctt
361 tgaaggatgg cgggagaaac tgaagaataa agacgatatg gcccttcctc gctctgagat
421 tgaaagtctg ggccagtttg aagctggggg aggatcaaac gaaggaagga gtgttatgag
481 ggttcatggg gtctctccaa gtacaatggt gtatgaagga aaggtagaga ctggagattc
541 tgacttcaat actactggag ttagtttggg atctagacag aggatggtct ttgaagccgc
601 ccgaaggagg gctcagtcaa acattgaggc tgatagggac agcatggctc ctccttttgc
661 ctccggggac cctttttcaa ggcccaaggt gcaggatgtt cagaggtttt catatgagcc
721 cagctcgcca gatgctgcaa ctgctgaaaa catagagtac atacgggctg acctagtgag
781 agccggtgtt cctctgaagg atataacctt tgccatgtgg gacatagcac gttactgcgc
841 tgatgctgga tcatcagaat ccactgaatt atcggcacca gcagttatgg gggtagagtt
901 gctaggatgg aaattgcagc aattatcaaa aagcacacta cactcagaag gttttgcggg
961 ttctacgcta aaattgtatg gaacatcatg cttgtaacta acataccacc atctgggtgg
1021 atgaagagag g
//
LOCUS MH476301 3207 bp DNA circular VRL 09-SEP-2019
DEFINITION UNVERIFIED: Grapevine red blotch virus isolate NSRB8, complete
genome.
ACCESSION MH476301
VERSION MH476301.1
KEYWORDS UNVERIFIED.
SOURCE Grapevine red blotch virus
ORGANISM Grapevine red blotch virus
Viruses; Geminiviridae; Grablovirus.
REFERENCE 1 (bases 1 to 3207)
AUTHORS Poojari,S., Moreau,D.L., Kahl,D., Lowery,T.D. and Urbez Torres,J.R.
TITLE Disease incidence and genetic variability of grapevine viruses
under cool-climate conditions of Nova Scotia
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3207)
AUTHORS Poojari,S., Moreau,D.L., Kahl,D., Lowery,T.D. and Urbez Torres,J.R.
TITLE Direct Submission
JOURNAL Submitted (10-JUN-2018) Plant Pathology, Summerland Research and
Development Centre and Kentville Research and Development Centre,
Hy 97, Summerland, British Columbia V0H1Z0, Canada
COMMENT GenBank staff is unable to verify sequence and/or annotation
provided by the submitter.
##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3207
/organism="Grapevine red blotch virus"
/mol_type="genomic DNA"
/isolate="NSRB8"
/host="Vitis vinifera cv. Pinot Noir"
/db_xref="taxon:1381007"
/country="Canada"
/collection_date="20-Sep-2016"
gene 290..805
/gene="V2"
CDS 290..805
/gene="V2"
/codon_start=1
/product="V2 protein"
/protein_id="QEL53151.1"
/translation="MGTLNKRNRVFPDRDSCSSSESSLNDIDICGDVDALGDEALDAG
SVYSSSQKLLVSVAKDVLLDDCDATVLDISLPSALWFLSQRYLTCCLRKELLPLPGIS
ERQTVLLRQLTRRVARRHCLFTYKCEEWFEGCLKIKEDGTEKKEPPTEAEKKAQSDWE
EFCRKAACSAX"
gene 708..1379
/gene="V1"
CDS 708..1379
/gene="V1"
/codon_start=1
/product="V1 protein"
/protein_id="QEL53152.1"
/translation="MVLKKRSRQRKQRRRRKATGRSSAGRRRARPRSRPCQFAFXGNS
FGGTPSLFFLTPIALGTGAEDRTGPVLTVSSMYLKGVVLPTDNVTDGLHDIYFWIILD
RFPTGTDPSVSDIFTGSDNSGSMIETLTRNRLNRKRFRILGSKKLVVGVNKKPQESLP
HSRAAFNIFQRRRLVVAFKNDXSGGGRNDVERNRIYLSAASASGHTFRLYLNGIVNFY
NGVIF"
gene 1409..1735
/gene="V3"
misc_feature 1409..1735
/gene="V3"
/note="similar to V3 protein"
misc_feature complement(1898..2257)
/note="similar to C2 protein"
gene complement(2254..3045)
/gene="C1"
CDS complement(2254..3045)
/gene="C1"
/codon_start=1
/product="C1 protein"
/protein_id="QEL53153.1"
/translation="MASSSSFNLRSKNFFLTYPQCPVHKQXALDLFKSKFSKTLDYAL
IAEEKHQDGEPHLHALLIFKKRQAIRNPKHFDITISSHSYHPNITKPRDVTDVLNYVG
KDGDTVEFGTKPTLKPKRQSRELDFGEYLRVANSKEEFLQLVRNNYPYQYVLNLQRLE
YFAAQTWPPAPAPHANQWTAWNNLPPEIHLWVQNELFVVRKDSARRNLGPGINNFLEQ
ETKRVQHIIDDKLDTYYLDYVERIYNTDDELNNAGSDAPKEEEPW"
gene complement(2409..2891)
/gene="C3"
CDS complement(2409..2891)
/gene="C3"
/codon_start=1
/product="C3 protein"
/protein_id="QEL53154.1"
/translation="MASHTYTPCSSSKSDRLFVIQNTLTSPYRLIPTIQISQSPEMSP
TCLTTSEKTGIPSNSEPNQLSNQNDNPENWILENICELQTPKKNSCNSSETITHTNTS
SIYNDLNTLLLKHGLQHLPPMPTNGQLGITFHQKFISGSKMNSSWYVKIQPEETSDQE
"
ORIGIN
1 actggcactt cccmtggtac gtggtattct tgcggagcaa gtttctcaac tttggtaaat
61 gcttctghtt ggttggcgag gtatctcggc tttttctttg tcggccactt gcgtaacttg
121 tacgcgaagc caggtggccg aatatatgct taaagttagg gtttwttttt aatggaggat
181 cgatgcgggt ggagacgcac tttggctgtg gtgctyattt ctctgtcagt attttggctg
241 ttgtactggt tagttttctt tgctcgtcgc atttgtaaga agaatcggaa tgggaacact
301 gaacaaacgt aatcgcgtct ttcctgaccg cgattcctgc agttctagtg aaagttctct
361 gaatgatatt gatatttgtg gtgatgttga tgcgttaggg gatgaggctt tagacgctgg
421 gtccgtttat tcgtcgtcac agaaactgtt agtttctgtg gctaaagatg ttctgttaga
481 tgactgtgat gcaacggtat tggatatatc gttgccttct gcgttatggt tcttgtcgca
541 aagatatttg acttgttgtc tgaggaaaga gcttctgcct ttgccaggta tatccgagag
601 acagactgtt ttattgcgtc aactgactag acgcgttgct cgacgtcatt gtttatttac
661 ttacaagtgc gaggagtggt tcgagggttg tttgaagata aaggaggatg gtactgaaaa
721 aaaggagccg ccaacggaag cagagaagaa ggcgcaaagc gactgggagg agttctgcag
781 gaaggcggcg tgctcggccw cgtagtaggc cttgtcagtt tgcatttyat gggaactctt
841 ttgggggtac cccttccctt ttttttttaa ctcccattgc tttagggact ggtgcggaag
901 acagaactgg tccagtattg actgtaagca gtatgtattt aaaaggtgtt gtgcttccga
961 cggacaatgt cacggatggg ttgcatgata tttatttttg gattatttta gatcggtttc
1021 ctactggaac cgatccttct gtgtctgaca tattcactgg tagtgataat agcggaagca
1081 tgattgagac attgacgagg aatcgtttga atcgtaagag atttcgtatt cttggttcga
1141 agaaacttgt tgttggtgtg aacaagaagc cgcaggagtc attgccgcat tcacgtgcag
1201 catttaatat ttttcaaaga cgtcgtctgg ttgttgcttt taaaaacgac rtgtctggtg
1261 gaggacggaa tgatgttgaa aggaatcgca tttatttaag tgcggcttct gcaagtggac
1321 atacgtttag attgtatcta aatggaattg taaattttta taatggagtt attttttaat
1381 agaccacgct gtttattatg gcgtgtgtat gatcaagttt ctgagtttgg attgtatgat
1441 ggtggtgaag atgttgatat cccccattgt tggggatgat gaaaatgatg aaatggttac
1501 aactgagtac ggtgaattcg ttaagacgtt gaagagacgt cgatctgagc gcggagaggt
1561 gacaaaaagt tacaagcgaa gaattgcatt gactgaacct gatggtagaa gaactgaagt
1621 tgaagaatta aaagattatt tgctagagga agattatgat aaacatagaa gacgtctgga
1681 cctggagcta ggctcaggtt tacacagtcc agacagtcgt tgtacagtaa tgtgaatgtt
1741 gtatttggat attcgaataa tagaatatgg tgcaggaatt tattcaaatt atggcgtaaa
1801 cactttgaaa taacacacac tccaatacca gataatcagg cacgattttc tatatgaaag
1861 aacccagccg cgaagcggct ggctgcccct ttatttatca gtacaacggt ccattgattt
1921 ttacaaaggt aatgttgtct tcagcccacg gcttgaatgw tgcattccaa ttggtgatgg
1981 cgtcgtagta agactgatct ggattacaaa gaacaatcga agggattcct cccttgattt
2041 tccgctttgg acgatatttt tcatttgcta tgtaattaga ttgacaacct aataaggctt
2101 ytttacaagg caaatactgg aatggtatat cgtcaataat attgtacaaa gcgtcatcta
2161 tgtatagact gaagtctact gattcacacc agtagttatg ttttcccaat gaaacagccc
2221 attgcgtctt ccctgtcttc gatggtcctt caatcaccag ggctcttcct ccttcggtgc
2281 gtctgatcct gcattgttga gttcatcgtc agtattatat attctctcga cataatccaa
2341 gtartacgtg tctagcttgt cgtctatgat atgctggaca cgtttggttt cttgttccag
2401 gaaattgttt attcctggtc cgaggtttct tctggctgaa tctttacgta ccacgaagag
2461 ttcattttgg acccagagat gaatttctgg tggaaggtta ttccaagctg tccattggtt
2521 ggcatggggg gcaggtgctg gaggccatgt ttgagcagca aagtattcaa gtcgttgtag
2581 attgaggacg tattggtatg ggtaattgtt tctgacgagt tgcaggaatt cttctttgga
2641 gtttgcaact cgcagatatt ctccaaaatc cagttctctg gattgtcgtt ttggtttgag
2701 agttggtttg gttccgaatt cgacggtatc cccgtctttt ccgacgtagt taagcacgtc
2761 ggtgacatct ctgggctttg tgatatttgg atggtaggaa tgagacgata tggtgatgtc
2821 aaagtgtttt ggattacgaa tagcctgtcg ctttttgaag atgagcaagg cgtgtaggtg
2881 tggctcgcca tcctgatgtt tttcttcagc tatgagagcg taatctaggg tttttgagaa
2941 tttggatttg aagaggtcga gagcarattg tttatgaact gggcattgag ggtatgtgag
3001 gaagaagttt tttgagcgga gattgaagga actgcttgat gccatcttgg ttgtataaga
3061 tggaacggta ctctttatat agtggttgat tagatgacgt caggctgatg tcagctattt
3121 tgtcttatta tcccccaact cttccttata ttttaggtgg tatttggtac tcacggcaaa
3181 atttgtatag aagtgccata taatatt
//
LOCUS MH476299 3208 bp DNA circular VRL 09-SEP-2019
DEFINITION UNVERIFIED: Grapevine red blotch virus isolate NSRB6, complete
genome.
ACCESSION MH476299
VERSION MH476299.1
KEYWORDS UNVERIFIED.
SOURCE Grapevine red blotch virus
ORGANISM Grapevine red blotch virus
Viruses; Geminiviridae; Grablovirus.
REFERENCE 1 (bases 1 to 3208)
AUTHORS Poojari,S., Moreau,D.L., Kahl,D., Lowery,T.D. and Urbez Torres,J.R.
TITLE Disease incidence and genetic variability of grapevine viruses
under cool-climate conditions of Nova Scotia
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3208)
AUTHORS Poojari,S., Moreau,D.L., Kahl,D., Lowery,T.D. and Urbez Torres,J.R.
TITLE Direct Submission
JOURNAL Submitted (10-JUN-2018) Plant Pathology, Summerland Research and
Development Centre and Kentville Research and Development Centre,
Hy 97, Summerland, British Columbia V0H1Z0, Canada
COMMENT GenBank staff is unable to verify sequence and/or annotation
provided by the submitter.
##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3208
/organism="Grapevine red blotch virus"
/mol_type="genomic DNA"
/isolate="NSRB6"
/host="Vitis vinifera cv. New York Muscat"
/db_xref="taxon:1381007"
/country="Canada"
/collection_date="20-Sep-2016"
gene 292..807
/gene="V2"
CDS 292..807
/gene="V2"
/codon_start=1
/product="V2 protein"
/protein_id="QEL53141.1"
/translation="MGTLNKRNRVFPDRDSCSSSESSLNDIDICGDVDALGDEALDAG
SVYSSSQKLLVSVAKDVLLDDCDATVLDISLPSALWFLSQRYLTCCLRKELLPLPGIS
ERQTVLLRQLTRRVARRHCLFTYKCEEWFEGCLKIKEDGTEKKEPPTEAEKKAQSDWE
EFCRKAACSAT"
gene 710..1381
/gene="V1"
CDS 710..1381
/gene="V1"
/codon_start=1
/product="V1 protein"
/protein_id="QEL53142.1"
/translation="MVLKKRSRQRKQRRRRKATGRSSAGRRRARPRSRPCQFAFHGNS
FGGTPSLFFLTPIALGTGAEDRTGPVLTVSSMYLKGVVLPTDNVTDGLHDIYFWIILD
RFPTGTDPSVSDIFTGSDNSGSMIETLTRNRLNRKRFRILGSKKLVVGVNKKPQESLP
HSRAAFNIFQRRRLVVAFKNDVSGGGRNDVERNRIYLSAASASGHTFRLYLNGIVNFY
NGVIF"
gene 1365..1736
/gene="V3"
CDS 1365..1736
/gene="V3"
/codon_start=1
/product="V3 protein"
/protein_id="QEL53143.1"
/translation="MELFFNRPRCLLWRVYDQVSEFGLYDGGEDVDIPIVGDDEDDEM
VTTEYGEFVKTLKRRRSERGEVTKSYKRRIALTEPDGRRTEVEELKDYLLEEDYDKHR
RRLDLELGSGLHSPDSRCTVM"
gene complement(1899..2333)
/gene="C2"
CDS complement(1899..2333)
/gene="C2"
/codon_start=1
/product="C2 protein"
/protein_id="QEL53144.1"
/translation="MSREYIILTMNSTMQDQTHRRRKSLVIEGPSKTGKTQWAVSLGK
HNYWCESVDFSLYIDDALYNIIDDIPFQYLPCKKALLGCQSNYIANEKYRPKRKIKGG
IPSIVLCNPDQSYYDAITNWNASFKPWAEDNIIFVKIDGPLY"
gene complement(2251..2892)
/gene="C3"
misc_feature complement(2251..2892)
/gene="C3"
/note="similar to C3 protein"
gene complement(2498..3046)
/gene="C1"
misc_feature complement(2498..3046)
/gene="C1"
/note="similar to C1 protein"
ORIGIN
1 actggcactt cccatggtac gtggtattct tgcggagcaa gtttctcaac tttggtaaat
61 gcttctgatt ggttggcgag gaatctcggc tttttctttg tcggccgctt gcgtatctta
121 tacgcgaagc cagctggccg agaatatatg cttaaagtta gggtttattt ttaatggagg
181 atcgatgcgg gtggagacgc actttggctg tggtgctcat ttctctgtca gtattttggc
241 tgttgtactg gttagttttc tttggtcgtc gcatttgtaa gaagaatcgg aatgggaaca
301 ctgaacaaac ggaatcgcgt ctttcctgat cgcgattcct gcagttctag tgaaagttct
361 ctgaatgata ttgatatttg tggtgatgtt gatgcgttag gggatgaggc tttagacgct
421 gggtccgttt attcgtcgtc acagaaactg ttagtttctg tggctaaaga tgttctgtta
481 gatgactgtg atgcaacggt attggatata tcgttgcctt ctgcgttatg gttcttgtcc
541 caaagatatt tgacttgttg tctgaggaaa gagcttctgc ctttgccagg tatatccgag
601 agacagactg ttttattgcg tcaactgact agacgcgttg ctcgacgtca ttgtttattt
661 acttacaagt gcgaggagtg gttcgagggt tgtttgaaga taaaggagga tggtactgaa
721 aaaaaggagc cgccaacgga agcagagaag aaggcgcaaa gcgactggga ggagttctgc
781 aggaaggcgg cgtgctcggc cacgtagtag gccttgtcag tttgcatttc atgggaactc
841 ttttgggggt accccttccc tttttttttt aactcccatt gctttaggga ctggtgcgga
901 agacagaact ggtccagtat tgactgtaag cagtatgtat ttaaaaggtg ttgtgcttcc
961 gacggacaat gtcacggatg ggttgcatga tatttatttt tggattattt tagatcggtt
1021 tcctactgga accgatcctt ctgtatctga catattcact ggtagtgata atagcggaag
1081 catgattgag acattgacga ggaatcgttt gaatcgtaag agatttcgta ttcttggttc
1141 gaagaaactt gttgttggtg tgaacaagaa gccgcaggag tcattgccgc attcacgtgc
1201 agcatttaat atttttcaaa gacgtcgtct ggttgttgct tttaaaaacg acgtgtctgg
1261 tggaggacgg aatgatgttg aaaggaatcg catttattta agtgcggctt ctgcaagtgg
1321 acatacgttt agattgtatc taaatggaat tgtaaatttt tataatggag ttatttttta
1381 atagaccacg ctgtttatta tggcgtgtgt atgatcaagt ttctgagttt ggattgtatg
1441 atggtggtga agatgttgat atccccattg ttggggatga tgaagatgat gaaatggtta
1501 caactgagta cggtgaattc gttaagacgt tgaagagacg tcgatctgag cgcggagagg
1561 tgacaaaaag ttacaagcga agaattgcat tgactgaacc tgatggtaga agaactgaag
1621 ttgaagaatt aaaagattat ttgctagagg aagattatga taaacataga agacgtctgg
1681 acctggagct aggctcaggt ttacacagtc cagacagtcg ttgtacagta atgtgaatgt
1741 tgtatttgga tattcgaata atagaatatg gtgcaggaat ttattcaaat tatggcgtaa
1801 acactttgaa ataacacaca ctccaatacc agataatcag gcacgagttt ctatatgaaa
1861 gaacccagcc gcgaagcggc tggctgcccc tttatttatc agtacaacgg tccatcaatt
1921 tttacaaaga taatgttgtc ttcagcccac ggcttgaatg atgcattcca attggtgatg
1981 gcgtcgtagt aggattgatc tggattacaa agaacaatcg aagggattcc tcccttgatt
2041 ttccgctttg gacgatattt ttcatttgct atgtaattag attgacaacc taataaggct
2101 tttttacaag gcaaatactg gaatggtata tcatcaataa tattgtacaa agcatcatct
2161 atgtatagac tgaagtctac tgattcacac cagtagttat gttttcctaa tgaaacagcc
2221 cattgcgtct tccccgtctt cgatggtcct tcaatcacca ggctcttcct ccttcggtgc
2281 gtctgatcct gcattgttga gttcatcgtc agtattatat attctctcga cataatccaa
2341 gtaatacgtg tctagcttgt cgtctattat atgctggaca cgtttggttt cttgttccag
2401 gaaattgttt attcctggtc cgaggtttct tctggctgaa tttttacgta ccacgaagag
2461 ttcattttgg acccagagat gaatttctgg tggaaggtta ttccaagctg tccattggtt
2521 ggcatggggg ggcaggtgct ggaggccatg tttgagcagc aaagtattca agtcgttgta
2581 gattgaggac gtattggtag gggtaatgtt gtttgacgag ttgcagaaac tcgtctttgg
2641 aatttgcaac tcgtaggaat tctccaaaat ccagttctct ggattgcttc tttgatttga
2701 gagttggctt tgtaccgtgc tcgacggtat ctccttcttt tccgacgtaa ttaagcacgt
2761 cggcgacatc tctgggcttt gtgatattgg ggtgatagga atgagacgat atggtgatgt
2821 caaagtgttt tggattgcga atagcctgtc gttttttgaa gatgagcaag gcgtgtaggt
2881 gtggctcgcc attctgatgt ttttcttctc cgatgagagc gtaatctagg gttttttgga
2941 acttggattt gaagaagtct agggcaaact gtttatggac tgggcactga gggtatgtga
3001 ggaagaggtt ttttgagcgg agattgaagg agctacttga tgccatcttg gttgtataag
3061 atgggttggt actctttata tagtggttga ttagatgacg tcaggtgatg tcagctattt
3121 tgttttatta tccctcaatt ctagcttata gttttggtgg tattttggta ctcagggcaa
3181 aatttgtatt gaagtgccat ataatatt
//
LOCUS NC_040817 3687 bp DNA circular VRL 12-SEP-2019
DEFINITION Camellia chlorotic dwarf-associated virus isolate Ca-1, complete
genome.
ACCESSION NC_040817
VERSION NC_040817.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Camellia chlorotic dwarf-associated virus
ORGANISM Camellia chlorotic dwarf-associated virus
Viruses; Geminiviridae; unclassified Geminiviridae.
REFERENCE 1 (bases 1 to 3687)
AUTHORS Zhang,S., Shen,P., Li,M., Tian,X., Zhou,C. and Cao,M.
TITLE Discovery of a novel geminivirus associated with camellia chlorotic
dwarf disease
JOURNAL Arch. Virol. (2018) In press
PUBMED 29500570
REMARK Publication Status: Available-Online prior to print
REFERENCE 2 (bases 1 to 3687)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (12-FEB-2019) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3687)
AUTHORS Zhang,S. and Cao,M.
TITLE Direct Submission
JOURNAL Submitted (05-NOV-2017) National Center for Citrus Virus Exclusion,
Citrus Research Institute, Chinese Academy of Agricultural
Sciences, Southwest University, Beibei Xiema town citrus village in
Chongqing, Beibei, Chongqing 400712, China
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to MG452759.
##Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench (Qiagen) v. 9.5
Sequencing Technology :: Illumina; Sanger dideoxy sequencing
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..3687
/organism="Camellia chlorotic dwarf-associated virus"
/mol_type="genomic DNA"
/isolate="Ca-1"
/host="camellia"
/db_xref="taxon:2122733"
/country="China"
gene 235..561
/locus_tag="EXL43_gp1"
/db_xref="GeneID:41701981"
CDS 235..561
/locus_tag="EXL43_gp1"
/codon_start=1
/product="hypothetical protein"
/protein_id="YP_009553588.1"
/db_xref="GeneID:41701981"
/translation="MFRVRHVLLAISKLWVFELKYMEKIFGDTESENKVLFALCILFI
IYGLVCNVVFCYGGFTRKYMGPSIYVLREVSDGGVECCSSCPSVNPGGYADGEVGISR
KKLPEC"
gene 386..820
/locus_tag="EXL43_gp2"
/db_xref="GeneID:41701982"
CDS 386..820
/locus_tag="EXL43_gp2"
/codon_start=1
/product="hypothetical protein"
/protein_id="YP_009553589.1"
/db_xref="GeneID:41701982"
/translation="MSSFAMEGLPESIWGLVFMCCVRYLMGELNAVLPARQLIPEVMP
MGKLGFLGKNCQSVKDAYCIRELVRLVRRLGRVKDKRKVYGDYKKWQGIWNRNRQASD
VEKPSEKECEEQGICYECGEKIPECWCKYSKDGVEGEGPGWV"
gene 636..1388
/locus_tag="EXL43_gp3"
/db_xref="GeneID:41701980"
CDS 636..1388
/locus_tag="EXL43_gp3"
/codon_start=1
/product="putative coat protein"
/protein_id="YP_009553590.1"
/db_xref="GeneID:41701980"
/translation="MATTRSGRVSGTVTDRLPMWRSRRKRSARSRGSATSAARRSRSA
GVSIRRTGWKGKVPDGCKGPCKTHSVDLIKTVYHDGRGAGFIGNIDKGEDLGNRDGRR
IRITKVLLRGKVWLDVTNAALPGSNVCKVWVIKDRRPGNEIVNFTSLMDMTDSEPMSA
LIKMDYRDRFIVLRDMQFDLHGGKDFRVDEASMDEMISVNCESLFSHEDEGNLSHCLE
NGILVYFACSDPRNAMQITAQCRVYFFDSTVN"
gene 1439..2329
/locus_tag="EXL43_gp4"
/db_xref="GeneID:41701979"
CDS 1439..2329
/locus_tag="EXL43_gp4"
/codon_start=1
/product="putative movement protein"
/protein_id="YP_009553591.1"
/db_xref="GeneID:41701979"
/translation="MSDVGNGGDVFNVNAYHSTKRVEYPLSNEWVKIKLAFPSMKDVS
WSKFRGHCMKIDHCQIDYAPQVPINASGSVIIVLNDTRMLLDEQLQAEYTFPLRCPIT
LNYYASSYFSLQDPVPWECFYKVENSSVKTGLHFAQFKARVKLSTAKKSSSILFRPPS
VTINSKEFSMDHVDFRHVAVKKPERFLCRSSSMIVSRPRIMIEPGESWATKSMLSGED
DDGSMLGLNHGPYKRLESLGPDAIDPGPSASQVGLSPTNFVIEPKELASIVADAVAVG
SQVAKSNEAGPSDYNTRKRV"
gene complement(2469..3583)
/locus_tag="EXL43_gp5"
/db_xref="GeneID:41701978"
CDS complement(join(2469..2867,2981..3583))
/locus_tag="EXL43_gp5"
/codon_start=1
/product="putative Rep protein"
/protein_id="YP_009553592.1"
/db_xref="GeneID:41701978"
/translation="MAPTQKQFRFASKNIFLTFAQCNLLMATLLDHLKHLLSNLDIIY
ISVCSELHASGDPHLHAMVQLKKPLQTRNPRFFDYNSDRNNFHPSFEPLRNPRASKSY
IQKDGNFIEEGEFQSNGKSPHKPANKVWQEILQKSTDENDFYKQVKMHRPADFVLRWP
AISSFAKDHYNRNFIPYTPQFENFVNLPDNIREWANNNVLCEPESRPHRPRSLYICGP
SRTGKTSWARSLGLHNYFTNSVKFHEYNDNALYNVIDDINYAKISTEIMKALVGAQRS
ITVNVKYRPDRTLLGGIPCIILCNPDMDWTVTMSPTIKQWWDLNVTEHYMSDSDVFY"
gene complement(2750..3583)
/locus_tag="EXL43_gp6"
/db_xref="GeneID:41701977"
CDS complement(2750..3583)
/locus_tag="EXL43_gp6"
/codon_start=1
/product="putative RepA protein"
/protein_id="YP_009553593.1"
/db_xref="GeneID:41701977"
/translation="MAPTQKQFRFASKNIFLTFAQCNLLMATLLDHLKHLLSNLDIIY
ISVCSELHASGDPHLHAMVQLKKPLQTRNPRFFDYNSDRNNFHPSFEPLRNPRASKSY
IQKDGNFIEEGEFQSNGKSPHKPANKVWQEILQKSTDENDFYKQVKMHRPADFVLRWP
AISSFAKDHYNRNFIPYTPQFENFVNLPDNIREWANNNVLCVSKTFVQYDLCYECSKK
AMFETECPISLLHNFYCDNCRSPSLDLIVHEASTSVDQAEQERHPGQDPSDYIIISQT
P"
ORIGIN
1 acagccgtgt cttgcgagga tgagtgggcg aatccgagcc gtcccgtttt tgtgcggtgt
61 agattttgcc gacagttgta gtggtggtcc cctaccacgt gcctctttta ttaatgcgcc
121 cgtctttatt ccccacccac tatcatagtg gtccagggga aataatgcaa agtcgtagat
181 tcgagacgac gtagttttgc ataagggcgg ggtttttgaa ttttcaaaat tcaaatgttt
241 cgtgtaagac acgttttgtt ggctataagt aagttgtggg tgtttgaact gaaatatatg
301 gagaaaatat ttggagatac agagagcgaa aataaggtat tatttgcact gtgcatttta
361 tttattattt acggtttagt ttgcaatgtc gtcttttgct atggagggtt tacccgaaag
421 tatatggggc ctagtattta tgtgttgcgt gaggtatctg atgggggagt tgaatgctgt
481 tcttcctgcc cgtcagttaa tcccggaggt tatgccgatg gggaagttgg gatttctcgg
541 aaaaaattgc cagagtgtta aagatgctta ttgtatcagg gaattagtaa ggttggttcg
601 acgactggga cgtgttaaag ataaacgtaa ggtatatggc gactacaaga agtggcaggg
661 tatctggaac cgtaacagac aggcttccga tgtggagaag ccgtcggaaa aggagtgcga
721 ggagcagggg atctgctacg agtgcggcga gaagatcccg gagtgctggt gtaagtattc
781 gaaggacggg gtggaagggg aaggtcccgg atgggtgtaa aggcccatgc aagacgcact
841 ctgttgattt aataaaaaca gtttaccacg acggacgggg tgctggtttt attggtaata
901 ttgacaaggg agaggacctt ggaaatcgtg atggtagaag aattaggatt actaaggtgt
961 tattgagggg taaggtttgg ttagatgtga caaatgctgc tttgcctggt agcaatgtgt
1021 gtaaggtgtg ggtcattaag gataggcgtc ctggtaatga aattgtgaat ttcacgtctc
1081 tgatggatat gacggattct gaacctatga gcgcactaat caagatggat taccgtgata
1141 ggtttattgt gttaagagac atgcaatttg atttgcatgg tggtaaagat ttcagagttg
1201 acgaagcatc tatggacgag atgatttctg ttaactgtga gtctttattt agtcatgaag
1261 atgaaggcaa tcttagccat tgtttagaga atggcattct tgtttatttt gcttgcagtg
1321 atcctaggaa tgcaatgcaa attacagctc aatgtagagt gtatttcttt gacagtactg
1381 taaattaaat atcattaata aaagcctttt tgtatttttt ttgttatgtt tttgcagaat
1441 gtcggatgtt ggtaatggtg gagatgtatt taatgttaat gcttatcata gcaccaagag
1501 ggttgagtat cccttgtcaa atgaatgggt aaagataaaa ttggcattcc catctatgaa
1561 agatgtgagt tggagtaaat ttagggggca ttgtatgaaa attgaccatt gtcaaattga
1621 ttatgcccct caagtgccta ttaacgccag cggaagcgta attattgtgt taaacgatac
1681 gaggatgttg ttggatgagc agttgcaggc tgaatataca tttccattaa gatgtcctat
1741 tacgctaaat tactacgcaa gtagttattt ttcgttacag gaccctgtgc cttgggaatg
1801 tttttacaag gttgaaaaca gttcagttaa gactgggctt cattttgccc agtttaaagc
1861 tcgtgttaag ttatcaacgg ctaagaagag ttcttcaatt ttatttcgtc cacctagtgt
1921 gactattaac agcaaggagt ttagcatgga tcatgttgat tttcggcacg tggctgtgaa
1981 aaaaccagaa aggtttttat gcaggagcag ttctatgatt gtcagcaggc ctagaattat
2041 gattgagcct ggtgaatcat gggctacaaa aagcatgttg agcggtgaag atgatgacgg
2101 tagtatgttg ggcctgaatc atgggcctta caaaaggctt gagtcattgg gcccagatgc
2161 tattgatcct gggcccagtg ctagtcaggt gggcttaagc ccaacgaatt ttgtaattga
2221 gcccaaggag ttggcaagta ttgttgcaga tgctgttgct gttggtagcc aagttgcaaa
2281 gagtaatgaa gctgggccta gtgactataa cacacggaag cgtgtgtgat aaattatttt
2341 tttttaacaa tgttatgtat ttaaaaaaat aattgcaact atatgtaatg agacggtatt
2401 atgtaactgg aaaactattt tattattaat attccgccgg aggctgtggg gagaacatgt
2461 tgtttccatt aataaaaaac atcagaatca gacatgtaat gttcagtaac gttgagatcc
2521 caccactgtt taattgtggg tgacattgtt accgtccagt ccatgtctgg gttacaaagg
2581 ataatacatg gtattccacc taataaagtc ctatcgggac ggtacttaac gttaacagta
2641 atagatcttt gtgctccaac taacgccttc attatttcgg tagatatttt agcataatta
2701 atgtcgtcta ttacattata taaggcgtta tcgttgtatt catggaactt cacggagttt
2761 gtgaaataat tatgtagtcc gagggatctt gcccaggatg tctttcctgt tctgcttggt
2821 ccacagatgt agaggcttcg tggacgatga ggtctagact cgggctcctg caattatcgc
2881 aatagaagtt atgaagtagc gatattggac attctgtttc aaacatggct ttcttagagc
2941 attcgtagca gaggtcgtat tgaacgaaag tcttgcttac acatagtacg ttgttgtttg
3001 cccattcgcg aatgttgtct ggcaaattga caaagttttc aaactgtggg gtgtagggga
3061 tgaaatttct gttgtagtga tctttcgcga atgatgatat cgctggccat cggagtacga
3121 agtctgctgg tctatgcatt tttacctgtt tataaaaatc attttcgtca gttgattttt
3181 gcaagatctc ttgccatacc ttgtttgctg gtttgtgtgg agattttcca ttggattgga
3241 attctccctc ttcaatgaag ttcccatctt tttgaatata tgattttgaa gctctggggt
3301 tcctcaatgg ttcaaagctc ggatgaaagt tgtttctatc ggagttataa tcaaagaacc
3361 ttggatttct tgtctgtaga ggttttttga gttgaaccat ggcatgaagg tgtggatcac
3421 ctgatgcatg cagttctgaa catacggata tgtaaattat atccaggttt gaaagaaggt
3481 gtttcagatg gtcaagtagt gtggccatta ggaggttaca ttgtgcgaat gttaggaaga
3541 tgtttttgga agcgaaccgg aattgttttt gggttggagc catggtatga tgggtgaaag
3601 ccgtactgcc aggaagggct ccccctaaga gtatctatat atgggaatgg caaatggcag
3661 gttcaagaca cggctatata taatatt
//
LOCUS NC_040757 1822 bp RNA linear VRL 13-SEP-2019
DEFINITION Aspergillus fumigatus partitivirus 2 segment 1, complete sequence.
ACCESSION NC_040757
VERSION NC_040757.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Aspergillus fumigatus partitivirus 2
ORGANISM Aspergillus fumigatus partitivirus 2
Viruses; Riboviria; Partitiviridae; unclassified Partitiviridae.
REFERENCE 1 (bases 1 to 1822)
AUTHORS Zoll,J., Verweij,P.E. and Melchers,W.J.G.
TITLE Discovery and characterization of novel Aspergillus fumigatus
mycoviruses
JOURNAL PLoS ONE (2018) In press
REFERENCE 2 (bases 1 to 1822)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (12-SEP-2019) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1822)
AUTHORS Zoll,J., Verweij,P.E. and Melchers,W.J.G.
TITLE Direct Submission
JOURNAL Submitted (11-APR-2018) Department of Medical Microbiology, Radboud
University Medical Center Nijmegen, PO Box 9101, Nijmegen 6500HB,
The Netherlands
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to MH192991.
##Assembly-Data-START##
Assembly Method :: CLC Genomic Workbench v. 11.0.1
Assembly Name :: V14513_323_48
Coverage :: 422
Sequencing Technology :: Illumina
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..1822
/organism="Aspergillus fumigatus partitivirus 2"
/mol_type="genomic RNA"
/isolate="V145-13"
/isolation_source="human lung biopsy"
/host="Aspergillus fumigatus"
/db_xref="taxon:2250452"
/segment="1"
/country="Netherlands"
/collection_date="04-Feb-2017"
gene 35..1756
/locus_tag="F2Q04_s1gp1"
/db_xref="GeneID:41704289"
CDS 35..1756
/locus_tag="F2Q04_s1gp1"
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="YP_009553311.1"
/db_xref="GeneID:41704289"
/translation="MLLTEIPNVYQRAVALERRIRLRELYPEGVVPYLAKQEYDGAIA
GPHGPHGSVAPSVTTTFQAKLPLDQYPDRKYTLECKETMIYLGKMDGYPFSSSIPKFD
PWFRKVLKDKDPAIVKDLEDTFMRDPCTPDRVMKHMSLFDRTWKRMPTGRLMSRAKDI
VAKMFEPIGKVEPIDFNFAGWHKILPNLDMTSSPGLPLRREYQTQGECLGHIYDKTKR
LNHFAKFLHPAAVRAPPCMIGVRPGLIRRDEYNEKVKARGVWAYPAEVKVMEMRFVQP
LIERMSLNFMKIPYPVGRNMTKALPMLIDHMLHDKKKGFVTDVSNLDASVGPDYIDWA
FSLMKTWFNFGITQSSETRNANVFDFLHYYFKRTPILLPSGQLVKKAGGVPSGSGFTQ
LVDTLVTILATVYTLLRMGWDEDQIIKGYMQVVGDDMAVSVPRDFDPEEFVYLMGSLG
FTINLKKVMFSDKGIELKFLGYSKYGGSVYRPLDELLQTAFFPEKFVGNPERSRMRIA
GQTLASGMTNAFFSKVNYWMEELVSLATELDPDEVFIPQRRWLRIVLGLDEMPSTTLA
FDMFPLV"
ORIGIN
1 cgaaaatgag tcacaacata acagttccca gcacatgcta ttaaccgaaa tccctaacgt
61 ttaccaacgg gcggttgccc ttgagcgccg tatccgactt agggaactgt accctgaagg
121 tgtcgtccca tatctcgcta aacaagagta tgatggtgcg atcgctggac cacacggtcc
181 acacggtagt gttgcaccga gtgtcactac tacttttcag gctaaacttc ctctcgatca
241 gtatccagac cgtaaataca ctttagaatg taaagaaacc atgatctatt tgggcaaaat
301 ggacggttat ccattttctt cgtcaattcc caaatttgat ccttggttcc gcaaggttct
361 aaaggataaa gatccggcca ttgtgaaaga tctagaggat accttcatgc gtgatccatg
421 cacccctgat cgcgttatga aacatatgtc tttattcgat aggacgtgga agcgaatgcc
481 gactggacgt ttaatgtcca gagcaaagga catcgttgct aagatgttcg aacccatcgg
541 taaagtcgag ccaatcgact ttaacttcgc aggttggcac aagatattgc caaacctaga
601 catgacctcc tccccaggtc tacccctccg acgcgaatat cagacacaag gcgaatgtct
661 tggtcacatt tacgataaga ccaagaggtt aaaccatttc gccaaattcc ttcaccccgc
721 tgccgttcgt gctccgcctt gtatgattgg tgtccgccca ggactcatca gacgtgacga
781 gtacaacgaa aaggtcaaag cgcgcggagt gtgggcgtat cctgctgaag tcaaggttat
841 ggaaatgcgt ttcgttcaac cgcttattga aaggatgtct ctcaacttta tgaagatacc
901 ttatcctgta ggacgcaaca tgaccaaagc acttccgatg ctaattgatc acatgcttca
961 tgacaagaag aaaggtttcg tcactgacgt ttccaatctc gacgcaagcg taggacctga
1021 ctatattgat tgggccttta gcttaatgaa gacttggttc aattttggta tcactcaatc
1081 ttctgaaacc aggaacgcaa atgtgtttga ttttcttcac tactacttta agaggactcc
1141 gatcctcctc ccatcaggac aactcgtcaa gaaggcgggt ggcgtgccct ccggttcggg
1201 ttttacccaa cttgtggaca ccttggttac aattctggca acagtgtata ccttgctgag
1261 aatgggctgg gatgaagatc aaatcatcaa aggctacatg caagtagtcg gtgatgacat
1321 ggctgtctcc gttcctcggg actttgatcc tgaagaattc gtttacctta tgggcagtct
1381 tggattcact attaatctca agaaggtgat gttttccgac aaaggaatag agctcaagtt
1441 tcttggctat tccaagtatg gaggaagcgt ctaccgcccc cttgatgaat tgcttcaaac
1501 cgctttcttt ccagaaaagt ttgttggcaa tcctgaacgt tcgcgaatgc gaatagctgg
1561 tcaaactcta gcttcaggaa tgacgaacgc tttctttagt aaagtcaatt actggatgga
1621 agagcttgtt tctctagcca ccgaattgga tcccgacgaa gtgttcatac ctcaacgccg
1681 ctggctgcgt atcgtgcttg gactcgatga aatgcctagc actactctgg cttttgacat
1741 gttcccgtta gtctagccga caacgacatg ttaggaactg aagtctcatt agcttcgata
1801 gtgttttcac tcctaacacc aa
//
LOCUS NC_040756 1638 bp RNA linear VRL 13-SEP-2019
DEFINITION Aspergillus fumigatus partitivirus 2 segment 2, complete sequence.
ACCESSION NC_040756
VERSION NC_040756.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Aspergillus fumigatus partitivirus 2
ORGANISM Aspergillus fumigatus partitivirus 2
Viruses; Riboviria; Partitiviridae; unclassified Partitiviridae.
REFERENCE 1 (bases 1 to 1638)
AUTHORS Zoll,J., Verweij,P.E. and Melchers,W.J.G.
TITLE Discovery and characterization of novel Aspergillus fumigatus
mycoviruses
JOURNAL PLoS ONE (2018) In press
REFERENCE 2 (bases 1 to 1638)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (12-SEP-2019) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1638)
AUTHORS Zoll,J., Verweij,P.E. and Melchers,W.J.G.
TITLE Direct Submission
JOURNAL Submitted (11-APR-2018) Department of Medical Microbiology, Radboud
University Medical Center Nijmegen, PO Box 9101, Nijmegen 6500HB,
The Netherlands
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to MH192992.
##Assembly-Data-START##
Assembly Method :: CLC Genomic Workbench v. 11.0.1
Assembly Name :: V14513_323_48
Coverage :: 422
Sequencing Technology :: Illumina
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..1638
/organism="Aspergillus fumigatus partitivirus 2"
/mol_type="genomic RNA"
/isolate="V145-13"
/isolation_source="human lung biopsy"
/host="Aspergillus fumigatus"
/db_xref="taxon:2250452"
/segment="2"
/country="Netherlands"
/collection_date="04-Feb-2017"
gene 96..1547
/locus_tag="F2Q04_s2gp1"
/db_xref="GeneID:41704288"
CDS 96..1547
/locus_tag="F2Q04_s2gp1"
/codon_start=1
/product="coat protein"
/protein_id="YP_009553310.1"
/db_xref="GeneID:41704288"
/translation="MPRKDTAEKDPVTKDDTKGQKDAAADSTDKGKGNKPKTQKQKTE
SSASKYTPGFAEGNSVLQGYNLSVSGRMERILSPFKGDKFFHFVSDAWSEFTRLKPHI
TERFSYAEFRHMSALQLYNRLEAVKFDALGVKQPAPTRIPLPRDTRVFQPIWSVLANI
GVVEDPDLRAIYIPDGIVPKSKDLSHPDDIENLLSCTLYDWESSWKEVVKAREARKQY
QQRTGLDATTDSNETTVQLSKEELIAKIQFFRKEITRAEEREKSPEYELVKGVLRKIK
AVTAPSSPSSSRSGKDNGTEATSPKKEYEQETYWTVSGAKNQLEAYMQQAKKLKSQMI
APKFDVTHKIESYRISDGTITTSPGSYGEWMRWDPQLYIDYENFVTEVTPMALFSLSM
PAESKGTYAWILPVEKREDDDSSVSARMPRASIPTATWVLALLLQSSTLPLHRRSTWY
TETDRLQNVLGVRRRYIKAAIKDPTAVEQYGTI"
ORIGIN
1 cgaaaatgag tcacaatata acatttaccg gcatttgcca ttaagctatt tctctttaca
61 cattcatacc gtttggcttt ctgattgtgt acaccatgcc gcgcaaggat accgccgaaa
121 aggatcccgt caccaaagac gatacaaagg gtcagaaaga tgccgctgct gattctactg
181 acaagggtaa aggcaacaag cctaagaccc agaaacagaa gaccgagtcc tctgcttcta
241 aatacacgcc tggtttcgct gaaggaaact ctgttctcca aggctacaac ctaagcgttt
301 caggaaggat ggagagaatt ctgtcaccgt ttaagggaga caaattcttc catttcgtga
361 gcgatgcctg gtctgagttc actagactca agcctcacat caccgagcgt ttctcatacg
421 ctgaatttcg gcatatgtca gctctccagc tgtacaaccg acttgaagct gtgaagttcg
481 atgctcttgg tgtaaagcag cctgctccga cccgaatccc ccttccacgt gatacgcgtg
541 tctttcaacc tatctggtct gttctggcaa atattggagt cgtcgaagac cccgatttgc
601 gtgcgattta cattcctgac ggtattgtcc ctaagtcaaa ggatctatct catcctgacg
661 atatcgaaaa cctcttgtcc tgcactctct atgattggga atcaagctgg aaagaagttg
721 tcaaagctcg ggaagctcgt aaacaatatc aacaacgcac tggtttggat gcaaccacag
781 attcgaacga gaccaccgtc caactctcca aggaagaact cattgccaag attcaattct
841 tccgcaagga gataactcgt gccgaggaac gcgaaaagag tcctgagtat gagttagtca
901 agggcgtgct ccgtaaaatc aaagctgtaa cagctccatc ctcgcccagc tcgtcaagaa
961 gcggtaagga taatggtacg gaagcaacat ctccgaagaa ggagtatgaa caagagactt
1021 actggaccgt ttccggtgcc aagaatcaac tcgaggccta catgcaacag gctaagaaac
1081 tgaagtctca aatgattgct ccgaaattcg acgtcactca caagattgag tcgtaccgga
1141 tttccgatgg tacaatcact acctctccag gctcgtacgg agaatggatg cgttgggacc
1201 cccaactcta cattgattat gagaactttg tcacagaagt aactccaatg gcactattct
1261 cgctgtccat gcctgctgaa tccaagggca cctatgcttg gattctcccg gtggaaaaac
1321 gtgaagatga cgactcttcc gtgtcagccc gcatgccgcg tgcttccatc cccactgcaa
1381 catgggttct tgctctactg ttgcaatctt ccacactacc gttacacagg cgttcaacct
1441 ggtatactga aactgacagg ttacagaacg ttctgggtgt gcgacgccgc tacatcaaag
1501 ctgcgatcaa agacccaact gctgtagaac aatacggtac tatctagtcc tagcgtgact
1561 acccgacaat aacgtatggg aatgatctct cattaggatc gatagttgtg aagactgttg
1621 tcgccaacaa ctccatac
//
LOCUS NC_040751 984 bp DNA circular VRL 13-SEP-2019
DEFINITION Cow vetch latent virus isolate Nano_VcLV_Sambuc_2010 segment DNA-C,
complete sequence.
ACCESSION NC_040751
VERSION NC_040751.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Cow vetch latent virus
ORGANISM Cow vetch latent virus
Viruses; Nanoviridae; unclassified Nanoviridae.
REFERENCE 1 (bases 1 to 984)
AUTHORS Gallet,R., Kraberger,S., Filloux,D., Galzi,S., Fontes,H.,
Martin,D.P., Varsani,A. and Roumagnac,P.
TITLE Nanovirus-alphasatellite complex identified in Vicia cracca in the
Rhone delta river region of France
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 984)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (12-SEP-2019) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 984)
AUTHORS Gallet,R., Kraberger,S., Filloux,D., Galzi,S., Fontes,H.,
Martin,D.P., Varsani,A. and Roumagnac,P.
TITLE Direct Submission
JOURNAL Submitted (20-JUL-2017) UMR BGPI, INRA, Cirad TA A-54/K Campus
International de Baillarguet, Montpellier 34398, France
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to MF535447.
##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..984
/organism="Cow vetch latent virus"
/mol_type="genomic DNA"
/isolate="Nano_VcLV_Sambuc_2010"
/isolation_source="host leaves"
/host="Vicia cracca"
/db_xref="taxon:2056780"
/segment="DNA C"
/country="France: Rhone delta region, Le Sambuc"
/lat_lon="43.51 N 4.73 E"
/collection_date="10-Jun-2010"
stem_loop join(966..984,1..12)
misc_feature join(978..984,1..2)
/note="conserved nonanucleotide at replication origin"
gene 289..801
/gene="clink"
/locus_tag="F2P95_sCgp1"
/db_xref="GeneID:41704228"
CDS 289..801
/gene="clink"
/locus_tag="F2P95_sCgp1"
/codon_start=1
/product="cell cycle link protein"
/protein_id="YP_009553302.1"
/db_xref="GeneID:41704228"
/translation="MVLKYFSLLPSELKEKIVREHLKEERKREFLENSVLAACRRYED
LLLKDDITDEELLHLSKFLDSLVQYVTDYIGSRCLIRWKKDVSPRVKYSVMEEQHIQL
YGFRDMEDLSCEELLLPEVEEDITYEDGMIVNCGQLDALFRDLGVTVVYITIGNGLIL
LPMCKEIVIT"
ORIGIN
1 acccccgtgc caggatcagc ggagtcattt aaaatacatc tcagccgtta aatgaagggg
61 acacgtgtac aatcaggatc tgtgattcgt gaagcgaatc tgacggaaga ttgtacagtg
121 acattatcgc tttcgctgtg ggtccagtta gctttcaacg cgttttactt tccacgcgtt
181 attgtggttt actttcccaa agattccagc tgtctttgct tcgtcccgaa gcaaagtata
241 cactgcgcta tttaagcaat cgtctttgtt gtgtttcaca caacaacgat ggttttaaaa
301 tatttctctc tcctgccctc tgaattaaaa gagaagattg ttcgtgaaca tctgaaggaa
361 gaacgtaaga gagagtttct ggaaaattca gttctagctg cttgccgaag atatgaagac
421 ttactactca aagatgatat tacagacgaa gagttgttgc atcttagtaa gtttttagat
481 tcattagttc agtatgttac tgattatatt ggtagtcgat gtcttattag atggaagaaa
541 gatgtttcgc caagagtgaa gtactccgtt atggaagaac agcatattca gctttatggg
601 tttcgggaca tggaggattt gtcttgtgaa gaactgttgc ttccagaggt tgaagaagat
661 attacatatg aagatgggat gattgttaac tgtggtcaat tagatgcatt gtttagggat
721 ttaggagtta cggtagttta cattactata ggtaatggtt tgattttgct tccaatgtgt
781 aaagaaattg taattacata attacaagaa agaaaataat aataaataaa cattagatta
841 taatgctatt gttccattta ctctgcgcag caatatgtct tggcccaata ggcccaatag
901 agataggccc aatatgttta gtattcaatt gatatcaaat aacactattt gatcccggga
961 tgagctggca cggggcttag tatt
//
LOCUS NC_040750 980 bp DNA circular VRL 13-SEP-2019
DEFINITION Cow vetch latent virus isolate Nano_VcLV_Sambuc_2010 segment
DNA-U4, complete sequence.
ACCESSION NC_040750
VERSION NC_040750.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Cow vetch latent virus
ORGANISM Cow vetch latent virus
Viruses; Nanoviridae; unclassified Nanoviridae.
REFERENCE 1 (bases 1 to 980)
AUTHORS Gallet,R., Kraberger,S., Filloux,D., Galzi,S., Fontes,H.,
Martin,D.P., Varsani,A. and Roumagnac,P.
TITLE Nanovirus-alphasatellite complex identified in Vicia cracca in the
Rhone delta river region of France
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 980)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (12-SEP-2019) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 980)
AUTHORS Gallet,R., Kraberger,S., Filloux,D., Galzi,S., Fontes,H.,
Martin,D.P., Varsani,A. and Roumagnac,P.
TITLE Direct Submission
JOURNAL Submitted (20-JUL-2017) UMR BGPI, INRA, Cirad TA A-54/K Campus
International de Baillarguet, Montpellier 34398, France
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to MF535454.
##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..980
/organism="Cow vetch latent virus"
/mol_type="genomic DNA"
/isolate="Nano_VcLV_Sambuc_2010"
/isolation_source="host leaves"
/host="Vicia cracca"
/db_xref="taxon:2056780"
/segment="DNA U4"
/country="France: Rhone delta region, Le Sambuc"
/lat_lon="43.51 N 4.73 E"
/collection_date="10-Jun-2010"
stem_loop join(963..980,1..11)
misc_feature join(974..980,1..2)
/note="conserved nonanucleotide at replication origin"
gene 342..656
/gene="U4"
/locus_tag="F2P95_sU4gp1"
/db_xref="GeneID:41704227"
CDS 342..656
/gene="U4"
/locus_tag="F2P95_sU4gp1"
/codon_start=1
/product="U4 protein"
/protein_id="YP_009553301.1"
/db_xref="GeneID:41704227"
/translation="MKRRFIMFSFLLLVFLNSSFVLNLVLGYVLGILLRKNLPGLMEL
IQGEEEETMLHKNEDNPFANVDQDVIAHLKTLGLDMKVQGEDADYLKKLWESMIGSRS
DN"
ORIGIN
1 acccccgtcc cgggatcgga gtcacgtacg gtatgactat tagccgttgg atcactggac
61 acgtgtacaa tcaggatctg tgattcgtga agcgaatctg acggaagatt gtgcactatc
121 gctttaccgc ccacttgcca atatactttt gtgagtggcc cacattactt tacatagtgc
181 attacagctg tatccagctt atatttattt aatttaaatt aaataaatac ctttcaagcg
241 tactaggcac gctgagtcta gatctataaa tagaagaggc ttcttatatt aatgcttgta
301 tcagcatata gttgttcatc aactatattg ttttcaataa gatgaaacgt aggtttatta
361 tgttttcgtt tcttctttta gtctttttaa attcttcctt cgtcctgaac ttggttctgg
421 gttatgttct gggtatttta ttgaggaaga atttacctgg gttaatggag ttaattcaag
481 gtgaagaaga agaaacgatg ttacacaaga acgaagacaa tcctttcgca aatgttgatc
541 aagatgttat agctcattta aagacgcttg gattggatat gaaggttcaa ggagaagacg
601 cagattactt aaagaagtta tgggaatcaa tgatcggtag tcgtagcgat aattaattag
661 ttatattgta ataattaaac atacgtttaa ttatgatgcc gcgttgtatc tcacatgtaa
721 atgattcgtg aataaaatat tctattttat tgggcctatc tctattgggc ctatttgata
781 tcaagaaacg cttcgcttat acatgtgtat ctatcattta cagtgttaaa ttaattgtaa
841 ctccagaaat aataattact aagatgtact aatcattatt cttgccttct aattactccg
901 cgcagcggta tgttaatgtt tatttagaat cagctgatgt cagctgatcc catgatgacg
961 tagggacggg gcttagtatt
//
LOCUS NC_040749 988 bp DNA circular VRL 13-SEP-2019
DEFINITION Cow vetch latent virus isolate Nano_VcLV_Sambuc_2010 segment
DNA-U1, complete sequence.
ACCESSION NC_040749
VERSION NC_040749.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Cow vetch latent virus
ORGANISM Cow vetch latent virus
Viruses; Nanoviridae; unclassified Nanoviridae.
REFERENCE 1 (bases 1 to 988)
AUTHORS Gallet,R., Kraberger,S., Filloux,D., Galzi,S., Fontes,H.,
Martin,D.P., Varsani,A. and Roumagnac,P.
TITLE Nanovirus-alphasatellite complex identified in Vicia cracca in the
Rhone delta river region of France
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 988)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (12-SEP-2019) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 988)
AUTHORS Gallet,R., Kraberger,S., Filloux,D., Galzi,S., Fontes,H.,
Martin,D.P., Varsani,A. and Roumagnac,P.
TITLE Direct Submission
JOURNAL Submitted (20-JUL-2017) UMR BGPI, INRA, Cirad TA A-54/K Campus
International de Baillarguet, Montpellier 34398, France
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to MF535452.
##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..988
/organism="Cow vetch latent virus"
/mol_type="genomic DNA"
/isolate="Nano_VcLV_Sambuc_2010"
/isolation_source="host leaves"
/host="Vicia cracca"