Closes #741

Adds the "swiss-army knife" component to run just filtering on files.

This involved modifying how the `.topostats` files are loaded and extracted because of the nesting (see #1068).

Tests currently fail because the `tests/resources/test_image/minicircle_small.topostats` is version `0.1` and doesn't
therefore work with the refactored structure (surprised #1068 passed all tests actualy!).

A separate commit will be made for updating this test file and the associated tweaking of tests.

Closes #741

Adds the "swiss-army knife" component to run just filtering on files.

This involved modifying how the `.topostats` files are loaded and extracted because of the nesting (see #1068).

Tests currently fail because the `tests/resources/test_image/minicircle_small.topostats` is version `0.1` and doesn't
therefore work with the refactored structure (surprised #1068 passed all tests actualy!).

A separate commit will be made for updating this test file and the associated tweaking of tests.

Closes #741

Adds the "swiss-army knife" component to run just filtering on files.

This involved modifying how the `.topostats` files are loaded and extracted because of the nesting (see #1068).

Tests currently fail because the `tests/resources/test_image/minicircle_small.topostats` is version `0.1` and doesn't
therefore work with the refactored structure (surprised #1068 passed all tests actualy!).

A separate commit will be made for updating this test file and the associated tweaking of tests.

Closes #741

Adds the "swiss-army knife" component to run just filtering on files.

This involved modifying how the `.topostats` files are loaded and extracted because of the nesting (see #1068).

Tests currently fail because the `tests/resources/test_image/minicircle_small.topostats` is version `0.1` and doesn't
therefore work with the refactored structure (surprised #1068 passed all tests actualy!).

A separate commit will be made for updating this test file and the associated tweaking of tests.

Closes #741

Adds the "swiss-army knife" component to run just filtering on files.

This involved modifying how the `.topostats` files are loaded and extracted because of the nesting (see #1068).

Tests currently fail because the `tests/resources/test_image/minicircle_small.topostats` is version `0.1` and doesn't
therefore work with the refactored structure (surprised #1068 passed all tests actualy!).

A separate commit will be made for updating this test file and the associated tweaking of tests.

Closes #989

As I go through writing additional entry points for #517 I thought it worth documenting how to incorporate functionality
into the workflow in terms of adding it to the end-to-end pipeline and how to create an additional entry point so that
the specific functionality can be run on its own.

This is based on having done `filters` (#741) over a few weeks and as I go forward with subsequent (e.g. #742) which I've
started I may well tweak/revise these notes in case I've missed anything or made mistakes.

Closes #989

As I go through writing additional entry points for #517 I thought it worth documenting how to incorporate functionality
into the workflow in terms of adding it to the end-to-end pipeline and how to create an additional entry point so that
the specific functionality can be run on its own.

This is based on having done `filters` (#741) over a few weeks and as I go forward with subsequent (e.g. #742) which I've
started I may well tweak/revise these notes in case I've missed anything or made mistakes.