From 3923b88b44998e60098d12e84e63e2d82b0512f0 Mon Sep 17 00:00:00 2001 From: Alex Balashov Date: Fri, 28 Aug 2020 13:00:13 -0400 Subject: [PATCH 1/2] Add HiGlass, update dependency versions --- .../viz/HiGlass/HiGlassPlainContainer.js | 335 + package-lock.json | 5966 +++++++++++++---- package.json | 18 +- .../viz/HiGlass/HiGlassPlainContainer.js | 216 + 4 files changed, 5376 insertions(+), 1159 deletions(-) create mode 100644 es/components/viz/HiGlass/HiGlassPlainContainer.js create mode 100644 src/components/viz/HiGlass/HiGlassPlainContainer.js diff --git a/es/components/viz/HiGlass/HiGlassPlainContainer.js b/es/components/viz/HiGlass/HiGlassPlainContainer.js new file mode 100644 index 00000000..204f7052 --- /dev/null +++ b/es/components/viz/HiGlass/HiGlassPlainContainer.js @@ -0,0 +1,335 @@ +'use strict'; + +Object.defineProperty(exports, "__esModule", { + value: true +}); +exports.HiGlassLoadingIndicator = HiGlassLoadingIndicator; +exports.HiGlassPlainContainer = void 0; + +var _react = _interopRequireDefault(require("react")); + +var _propTypes = _interopRequireDefault(require("prop-types")); + +var _underscore = _interopRequireDefault(require("underscore")); + +var _util = require("./../../util"); + +var _utilities = require("./../utilities"); + +var _packageLock = _interopRequireDefault(require("./../../../../package-lock.json")); + +function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { "default": obj }; } + +function _typeof(obj) { "@babel/helpers - typeof"; if (typeof Symbol === "function" && typeof Symbol.iterator === "symbol") { _typeof = function (obj) { return typeof obj; }; } else { _typeof = function (obj) { return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }; } return _typeof(obj); } + +function _extends() { _extends = Object.assign || function (target) { for (var i = 1; i < arguments.length; i++) { var source = arguments[i]; for (var key in source) { if (Object.prototype.hasOwnProperty.call(source, key)) { target[key] = source[key]; } } } return target; }; return _extends.apply(this, arguments); } + +function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } + +function _defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } + +function _createClass(Constructor, protoProps, staticProps) { if (protoProps) _defineProperties(Constructor.prototype, protoProps); if (staticProps) _defineProperties(Constructor, staticProps); return Constructor; } + +function _inherits(subClass, superClass) { if (typeof superClass !== "function" && superClass !== null) { throw new TypeError("Super expression must either be null or a function"); } subClass.prototype = Object.create(superClass && superClass.prototype, { constructor: { value: subClass, writable: true, configurable: true } }); if (superClass) _setPrototypeOf(subClass, superClass); } + +function _setPrototypeOf(o, p) { _setPrototypeOf = Object.setPrototypeOf || function (o, p) { o.__proto__ = p; return o; }; return _setPrototypeOf(o, p); } + +function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function () { var Super = _getPrototypeOf(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = _getPrototypeOf(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return _possibleConstructorReturn(this, result); }; } + +function _possibleConstructorReturn(self, call) { if (call && (_typeof(call) === "object" || typeof call === "function")) { return call; } return _assertThisInitialized(self); } + +function _assertThisInitialized(self) { if (self === void 0) { throw new ReferenceError("this hasn't been initialised - super() hasn't been called"); } return self; } + +function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Date.prototype.toString.call(Reflect.construct(Date, [], function () {})); return true; } catch (e) { return false; } } + +function _getPrototypeOf(o) { _getPrototypeOf = Object.setPrototypeOf ? Object.getPrototypeOf : function (o) { return o.__proto__ || Object.getPrototypeOf(o); }; return _getPrototypeOf(o); } + +function _defineProperty(obj, key, value) { if (key in obj) { Object.defineProperty(obj, key, { value: value, enumerable: true, configurable: true, writable: true }); } else { obj[key] = value; } return obj; } + +/** + * Functional component to display loading indicator. + * + * @param {{ icon: string, title: JSX.Element|string }} props Props passed into this Component. + */ +function HiGlassLoadingIndicator(props) { + var icon = props.icon, + title = props.title; + return /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, /*#__PURE__*/_react["default"].createElement("h3", null, /*#__PURE__*/_react["default"].createElement("i", { + className: "icon icon-lg icon-" + (icon || "tv fas") + })), title || "Initializing"); +} +/** Loaded upon componentDidMount; HiGlassComponent is not supported server-side. */ + + +var HiGlassComponent = null; +var StackedBarTrack = null; +var higlassRegister = null; + +var HiGlassPlainContainer = /*#__PURE__*/function (_React$PureComponent) { + _inherits(HiGlassPlainContainer, _React$PureComponent); + + var _super = _createSuper(HiGlassPlainContainer); + + _createClass(HiGlassPlainContainer, null, [{ + key: "correctTrackDimensions", + value: function correctTrackDimensions(hiGlassComponent) { + (0, _utilities.requestAnimationFrame)(function () { + _underscore["default"].forEach(hiGlassComponent.tiledPlots, function (tp) { + return tp && tp.measureSize(); + }); + }); + } + }]); + + function HiGlassPlainContainer(props) { + var _this; + + _classCallCheck(this, HiGlassPlainContainer); + + _this = _super.call(this, props); + _this.instanceContainerRefFunction = _this.instanceContainerRefFunction.bind(_assertThisInitialized(_this)); + _this.correctTrackDimensions = _this.correctTrackDimensions.bind(_assertThisInitialized(_this)); + _this.getHiGlassComponent = _this.getHiGlassComponent.bind(_assertThisInitialized(_this)); + _this.state = { + 'mounted': false, + 'mountCount': 0, + 'hasRuntimeError': false + }; + _this.hgcRef = /*#__PURE__*/_react["default"].createRef(); + return _this; + } + + _createClass(HiGlassPlainContainer, [{ + key: "componentDidMount", + value: function componentDidMount() { + var _this2 = this; + + var _this$props = this.props, + mountDelay = _this$props.mountDelay, + onViewConfigUpdated = _this$props.onViewConfigUpdated; + + var finish = function () { + _this2.setState(function (currState) { + return { + 'mounted': true, + 'mountCount': currState.mountCount + 1 + }; + }, function () { + setTimeout(_this2.correctTrackDimensions, 500); + + if (onViewConfigUpdated && typeof onViewConfigUpdated === 'function') { + var hgc = _this2.getHiGlassComponent(); + + if (hgc) { + hgc.api.on("viewConfig", onViewConfigUpdated); + } + } + }); + }; + + setTimeout(function () { + // Allow tab CSS transition to finish (the render afterwards lags browser a little bit). + if (!HiGlassComponent) { + window.fetch = window.fetch || _util.ajax.fetchPolyfill; // Browser compatibility polyfill + // Load in HiGlass libraries as separate JS file due to large size. + // @see https://webpack.js.org/api/module-methods/#requireensure + // TODO figure out how to use import() syntax to load multiple dependencies, to keep HiGlass working. + + require.ensure(['higlass/dist/hglib', 'higlass-register', 'higlass-multivec/es/StackedBarTrack'], function (require) { + HiGlassComponent = require('higlass/dist/hglib').HiGlassComponent; + higlassRegister = require('higlass-register')["default"]; + StackedBarTrack = require('higlass-multivec/es/StackedBarTrack')["default"]; + + _util.console.log("LOADED", HiGlassComponent); // Possible todo: use pluginTracks prop to pass `"horizontal-stacked-bar" : StackedBarTrack` + // in render method instead. + + + higlassRegister({ + name: 'StackedBarTrack', + track: StackedBarTrack, + config: StackedBarTrack.config + }); + finish(); + }, "higlass-utils-bundle"); + } else { + finish(); + } + }, mountDelay || 500); + } + }, { + key: "correctTrackDimensions", + value: function correctTrackDimensions() { + var hgc = this.getHiGlassComponent(); + + if (hgc) { + HiGlassPlainContainer.correctTrackDimensions(hgc); + } else { + _util.console.error('NO HGC'); + } + } + }, { + key: "componentWillUnmount", + value: function componentWillUnmount() { + this.setState({ + 'mounted': false + }); + } + }, { + key: "componentDidCatch", + value: function componentDidCatch() { + this.setState({ + 'hasRuntimeError': true + }); + } + /** + * Fade in div element containing HiGlassComponent after HiGlass initiates & loads in first tile etc. (about 500ms). + * For prettiness only. + */ + + }, { + key: "instanceContainerRefFunction", + value: function instanceContainerRefFunction(element) { + if (element) { + setTimeout(function () { + (0, _utilities.requestAnimationFrame)(function () { + element.style.transition = null; // Use transition as defined in stylesheet + + element.style.opacity = 1; + }); + }, 500); + } + } + }, { + key: "getHiGlassComponent", + value: function getHiGlassComponent() { + return this && this.hgcRef && this.hgcRef.current || null; + } + /** + * This returns the viewconfig currently stored in PlainContainer _state_. + * We should adjust this to instead return `JSON.parse(hgc.api.exportViewConfigAsString())`, + * most likely, to be of any use because HiGlassComponent keeps its own representation of the + * viewConfig. + * + * @todo Change to the above once needed. Don't rely on until then. + */ + + }, { + key: "getCurrentViewConfig", + value: function getCurrentViewConfig() { + var hgc = this.getHiGlassComponent(); + return hgc && hgc.state.viewConfig || null; + } + }, { + key: "render", + value: function render() { + var _this$props2 = this.props, + disabled = _this$props2.disabled, + isValidating = _this$props2.isValidating, + tilesetUid = _this$props2.tilesetUid, + height = _this$props2.height, + width = _this$props2.width, + options = _this$props2.options, + style = _this$props2.style, + className = _this$props2.className, + viewConfig = _this$props2.viewConfig, + placeholder = _this$props2.placeholder; + var _this$state = this.state, + mounted = _this$state.mounted, + mountCount = _this$state.mountCount, + hasRuntimeError = _this$state.hasRuntimeError; + var higlassVersionUsed = _packageLock["default"].dependencies.higlass.version; + var hiGlassInstance = null; + var outerKey = "mount-number-" + mountCount; + + if (isValidating || !mounted) { + var placeholderStyle = {}; + + if (typeof height === 'number' && height >= 140) { + placeholderStyle.height = height; + placeholderStyle.paddingTop = height / 2 - 40; + } + + hiGlassInstance = /*#__PURE__*/_react["default"].createElement("div", { + className: "text-center", + style: placeholderStyle, + key: outerKey + }, placeholder); + } else if (disabled) { + hiGlassInstance = /*#__PURE__*/_react["default"].createElement("div", { + className: "text-center", + key: outerKey, + style: placeholderStyle + }, /*#__PURE__*/_react["default"].createElement("h4", { + className: "text-400" + }, "Not Available")); + } else if (hasRuntimeError) { + hiGlassInstance = /*#__PURE__*/_react["default"].createElement("div", { + className: "text-center", + key: outerKey, + style: placeholderStyle + }, /*#__PURE__*/_react["default"].createElement("h4", { + className: "text-400" + }, "Runtime Error")); + } else { + hiGlassInstance = /*#__PURE__*/_react["default"].createElement("div", { + key: outerKey, + className: "higlass-instance", + style: { + 'transition': 'none', + height: height, + 'width': width || null + }, + ref: this.instanceContainerRefFunction + }, /*#__PURE__*/_react["default"].createElement(HiGlassComponent, _extends({ + options: options, + viewConfig: viewConfig, + width: width, + height: height + }, { + ref: this.hgcRef + }))); + } + /** + * TODO: Some state + UI functions to make higlass view full screen. + * Should try to make as common as possible between one for workflow tab & this. Won't be 100% compatible since adjust workflow detail tab inner elem styles, but maybe some common func for at least width, height, etc. + */ + + + return /*#__PURE__*/_react["default"].createElement("div", { + className: "higlass-view-container" + (className ? ' ' + className : ''), + style: style + }, /*#__PURE__*/_react["default"].createElement("link", { + type: "text/css", + rel: "stylesheet", + href: "https://unpkg.com/higlass@".concat(higlassVersionUsed, "/dist/hglib.css"), + crossOrigin: "true" + }), /*#__PURE__*/_react["default"].createElement("div", { + className: "higlass-wrapper" + }, hiGlassInstance)); + } + }]); + + return HiGlassPlainContainer; +}(_react["default"].PureComponent); + +exports.HiGlassPlainContainer = HiGlassPlainContainer; + +_defineProperty(HiGlassPlainContainer, "propTypes", { + 'viewConfig': _propTypes["default"].object.isRequired, + 'isValidating': _propTypes["default"].bool, + 'height': _propTypes["default"].number, + 'mountDelay': _propTypes["default"].number.isRequired, + 'onViewConfigUpdated': _propTypes["default"].func +}); + +_defineProperty(HiGlassPlainContainer, "defaultProps", { + 'options': { + 'bounded': true + }, + 'isValidating': false, + 'disabled': false, + 'height': 500, + 'viewConfig': null, + 'mountDelay': 500, + 'placeholder': /*#__PURE__*/_react["default"].createElement(HiGlassLoadingIndicator, null) +}); \ No newline at end of file diff --git a/package-lock.json b/package-lock.json index dc22694e..5761699c 100644 --- a/package-lock.json +++ b/package-lock.json @@ -51,9 +51,9 @@ } }, "@babel/compat-data": { - "version": "7.10.5", - "resolved": "https://registry.npmjs.org/@babel/compat-data/-/compat-data-7.10.5.tgz", - "integrity": "sha512-mPVoWNzIpYJHbWje0if7Ck36bpbtTvIxOi9+6WSK9wjGEXearAqlwBoTQvVjsAY2VIwgcs8V940geY3okzRCEw==", + "version": "7.11.0", + "resolved": "https://registry.npmjs.org/@babel/compat-data/-/compat-data-7.11.0.tgz", + "integrity": "sha512-TPSvJfv73ng0pfnEOh17bYMPQbI95+nGWc71Ss4vZdRBHTDqmM9Z8ZV4rYz8Ks7sfzc95n30k6ODIq5UGnXcYQ==", "dev": true, "requires": { "browserslist": "^4.12.0", @@ -62,19 +62,19 @@ } }, "@babel/core": { - "version": "7.10.5", - "resolved": "https://registry.npmjs.org/@babel/core/-/core-7.10.5.tgz", - "integrity": 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"integrity": "sha1-0Jb5JqPe1WAPP9/ZEZjLCIjC2GM=", + "requires": { + "is-extglob": "^1.0.0" + } + } + } + }, "glob-parent": { "version": "3.1.0", "resolved": "https://registry.npmjs.org/glob-parent/-/glob-parent-3.1.0.tgz", "integrity": "sha1-nmr2KZ2NO9K9QEMIMr0RPfkGxa4=", - "dev": true, "requires": { "is-glob": "^3.1.0", "path-dirname": "^1.0.0" @@ -8030,7 +9562,6 @@ "version": "3.1.0", "resolved": "https://registry.npmjs.org/is-glob/-/is-glob-3.1.0.tgz", "integrity": "sha1-e6WuJCF4BKxwcHuWkiVnSGzD6Eo=", - "dev": true, "requires": { "is-extglob": "^2.1.0" } @@ -8125,11 +9656,19 @@ "sparkles": "^1.0.0" } }, + "good-listener": { + "version": "1.2.2", + "resolved": "https://registry.npmjs.org/good-listener/-/good-listener-1.2.2.tgz", + "integrity": "sha1-1TswzfkxPf+33JoNR3CWqm0UXFA=", + "optional": true, + "requires": { + "delegate": "^3.1.2" + } + }, "graceful-fs": { "version": "4.2.2", "resolved": "https://registry.npmjs.org/graceful-fs/-/graceful-fs-4.2.2.tgz", - "integrity": 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"version": "0.7.3", + "resolved": "https://registry.npmjs.org/threads/-/threads-0.7.3.tgz", + "integrity": "sha1-69Awk6PtgwGFuRZgb6RvkyJJsk0=", + "requires": { + "eventemitter3": "^2.0.2", + "native-promise-only": "^0.8.1" + } + }, "throat": { "version": "4.1.0", "resolved": "https://registry.npmjs.org/throat/-/throat-4.1.0.tgz", @@ -14247,7 +17762,6 @@ "version": "2.0.5", "resolved": "https://registry.npmjs.org/through2/-/through2-2.0.5.tgz", "integrity": "sha512-/mrRod8xqpA+IHSLyGCQ2s8SPHiCDEeQJSep1jqLYeEUClOFG2Qsh+4FU6G9VeqpZnGW/Su8LQGc4YKni5rYSQ==", - "dev": true, "requires": { "readable-stream": "~2.3.6", "xtend": "~4.0.1" @@ -14273,16 +17787,25 @@ "version": "2.0.10", "resolved": "https://registry.npmjs.org/timers-browserify/-/timers-browserify-2.0.10.tgz", "integrity": "sha512-YvC1SV1XdOUaL6gx5CoGroT3Gu49pK9+TZ38ErPldOWW4j49GI1HKs9DV+KGq/w6y+LZ72W1c8cKz2vzY+qpzg==", - "dev": true, "requires": { "setimmediate": "^1.0.4" } }, + "tiny-emitter": { + "version": "2.1.0", + "resolved": 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"integrity": "sha512-NxjD61WsK/a3JIdwWjtIpimmvE6UrRi3yG54/74Hk9rwNj5FPkA4DJCf1z4ByDWLkvZhTZE+P3C/eh6UD5lDcw==", - "dev": true, "requires": { "@webassemblyjs/ast": "1.7.11", "@webassemblyjs/helper-module-context": "1.7.11", @@ -14990,14 +18617,12 @@ "acorn": { "version": "5.7.3", "resolved": "https://registry.npmjs.org/acorn/-/acorn-5.7.3.tgz", - "integrity": "sha512-T/zvzYRfbVojPWahDsE5evJdHb3oJoQfFbsrKM7w5Zcs++Tr257tia3BmMP8XYVjp1S9RZXQMh7gao96BlqZOw==", - "dev": true + "integrity": "sha512-T/zvzYRfbVojPWahDsE5evJdHb3oJoQfFbsrKM7w5Zcs++Tr257tia3BmMP8XYVjp1S9RZXQMh7gao96BlqZOw==" }, "schema-utils": { "version": "0.4.7", "resolved": "https://registry.npmjs.org/schema-utils/-/schema-utils-0.4.7.tgz", "integrity": "sha512-v/iwU6wvwGK8HbU9yi3/nhGzP0yGSuhQMzL6ySiec1FSrZZDkhm4noOSWzrNFo/jEc+SJY6jRTwuwbSXJPDUnQ==", - "dev": true, "requires": { "ajv": "^6.1.0", "ajv-keywords": "^3.1.0" @@ -15059,11 +18684,29 @@ "fast-glob": "^2.0.0" } }, + "webpack-dev-middleware": { + "version": "1.12.2", + "resolved": "https://registry.npmjs.org/webpack-dev-middleware/-/webpack-dev-middleware-1.12.2.tgz", + "integrity": "sha512-FCrqPy1yy/sN6U/SaEZcHKRXGlqU0DUaEBL45jkUYoB8foVb6wCnbIJ1HKIx+qUFTW+3JpVcCJCxZ8VATL4e+A==", + "requires": { + "memory-fs": "~0.4.1", + "mime": "^1.5.0", + "path-is-absolute": "^1.0.0", + "range-parser": "^1.0.3", + "time-stamp": "^2.0.0" + }, + "dependencies": { + "time-stamp": { + "version": "2.2.0", + "resolved": "https://registry.npmjs.org/time-stamp/-/time-stamp-2.2.0.tgz", + "integrity": "sha512-zxke8goJQpBeEgD82CXABeMh0LSJcj7CXEd0OHOg45HgcofF7pxNwZm9+RknpxpDhwN4gFpySkApKfFYfRQnUA==" + } + } + }, "webpack-sources": { "version": "1.3.0", "resolved": "https://registry.npmjs.org/webpack-sources/-/webpack-sources-1.3.0.tgz", "integrity": "sha512-OiVgSrbGu7NEnEvQJJgdSFPl2qWKkWq5lHMhgiToIiN9w34EBnjYzSYs+VbL5KoYiLNtFFa7BZIKxRED3I32pA==", - "dev": true, "requires": { "source-list-map": "^2.0.0", "source-map": "~0.6.1" @@ -15137,7 +18780,6 @@ "version": "1.3.1", "resolved": "https://registry.npmjs.org/which/-/which-1.3.1.tgz", "integrity": "sha512-HxJdYWq1MTIQbJ3nw0cqssHoTNU267KlrDuGZ1WYlxDStUtKUhOaJmh112/TZmHxxUfuJqPXSOm7tDyas0OSIQ==", - "dev": true, "requires": { "isexe": "^2.0.0" } @@ -15152,7 +18794,6 @@ "version": "1.1.3", "resolved": "https://registry.npmjs.org/wide-align/-/wide-align-1.1.3.tgz", "integrity": "sha512-QGkOQc8XL6Bt5PwnsExKBPuMKBxnGxWWW3fU55Xt4feHozMUhdUMaBCk290qpm/wG5u/RSKzwdAC4i51YigihA==", - "dev": true, "requires": { "string-width": "^1.0.2 || 2" } @@ -15162,6 +18803,11 @@ "resolved": "https://registry.npmjs.org/winchan/-/winchan-0.2.2.tgz", "integrity": "sha512-pvN+IFAbRP74n/6mc6phNyCH8oVkzXsto4KCHPJ2AScniAnA1AmeLI03I2BzjePpaClGSI4GUMowzsD3qz5PRQ==" }, + "window-size": { + "version": "0.1.0", + "resolved": "https://registry.npmjs.org/window-size/-/window-size-0.1.0.tgz", + "integrity": "sha1-VDjNLqk7IC76Ohn+iIeu58lPnJ0=" + }, "wordwrap": { "version": "1.0.0", "resolved": "https://registry.npmjs.org/wordwrap/-/wordwrap-1.0.0.tgz", @@ -15172,7 +18818,6 @@ "version": "1.7.0", "resolved": "https://registry.npmjs.org/worker-farm/-/worker-farm-1.7.0.tgz", "integrity": "sha512-rvw3QTZc8lAxyVrqcSGVm5yP/IJ2UcB3U0graE3LCFoZ0Yn2x4EoVSqJKdB/T5M+FLcRPjz4TDacRf3OCfNUzw==", - "dev": true, "requires": { "errno": "~0.1.7" } @@ -15212,8 +18857,7 @@ "wrappy": { "version": "1.0.2", "resolved": "https://registry.npmjs.org/wrappy/-/wrappy-1.0.2.tgz", - "integrity": "sha1-tSQ9jz7BqjXxNkYFvA0QNuMKtp8=", - "dev": true + "integrity": "sha1-tSQ9jz7BqjXxNkYFvA0QNuMKtp8=" }, "write": { "version": "1.0.3", @@ -15244,6 +18888,11 @@ "async-limiter": "~1.0.0" } }, + "wtf-8": { + "version": "1.0.0", + "resolved": "https://registry.npmjs.org/wtf-8/-/wtf-8-1.0.0.tgz", + "integrity": "sha1-OS2LotDxw00e4tYw8V0O+2jhBIo=" + }, "xml-name-validator": { "version": "2.0.1", "resolved": "https://registry.npmjs.org/xml-name-validator/-/xml-name-validator-2.0.1.tgz", @@ -15271,11 +18920,20 @@ "integrity": "sha512-7hew1RPJ1iIuje/Y01bGD/mXokXxegAgVS+e+E0wSi2ILHQkYAH1+JXARwTjZSM4Z4Z+c73aKspEcqj+zPPL/w==", "dev": true }, + "xmlhttprequest": { + "version": "1.8.0", + "resolved": "https://registry.npmjs.org/xmlhttprequest/-/xmlhttprequest-1.8.0.tgz", + "integrity": "sha1-Z/4HXFwk/vOfnWX197f+dRcZaPw=" + }, + "xmlhttprequest-ssl": { + "version": "1.5.3", + "resolved": "https://registry.npmjs.org/xmlhttprequest-ssl/-/xmlhttprequest-ssl-1.5.3.tgz", + "integrity": "sha1-GFqIjATspGw+QHDZn3tJ3jUomS0=" + }, "xtend": { "version": "4.0.2", "resolved": "https://registry.npmjs.org/xtend/-/xtend-4.0.2.tgz", - "integrity": "sha512-LKYU1iAXJXUgAXn9URjiu+MWhyUXHsvfp7mcuYm9dSUKK0/CjtrUwFAxD82/mCWbtLsGjFIad0wIsod4zrTAEQ==", - "dev": true + "integrity": "sha512-LKYU1iAXJXUgAXn9URjiu+MWhyUXHsvfp7mcuYm9dSUKK0/CjtrUwFAxD82/mCWbtLsGjFIad0wIsod4zrTAEQ==" }, "y18n": { "version": "3.2.1", @@ -15286,8 +18944,7 @@ "yallist": { "version": "2.1.2", "resolved": "https://registry.npmjs.org/yallist/-/yallist-2.1.2.tgz", - "integrity": "sha1-HBH5IY8HYImkfdUS+TxmmaaoHVI=", - "dev": true + "integrity": "sha1-HBH5IY8HYImkfdUS+TxmmaaoHVI=" }, "yargs": { "version": "7.1.0", @@ -15434,6 +19091,11 @@ "requires": { "camelcase": "^3.0.0" } + }, + "yeast": { + "version": "0.1.2", + "resolved": "https://registry.npmjs.org/yeast/-/yeast-0.1.2.tgz", + "integrity": "sha1-AI4G2AlDIMNy28L47XagymyKxBk=" } } } diff --git a/package.json b/package.json index 124ff220..2f41e04b 100644 --- a/package.json +++ b/package.json @@ -12,11 +12,11 @@ "author": "HMS DBMI/BGM", "devDependencies": { "@babel/cli": "^7.10.5", - "@babel/core": "^7.10.5", + "@babel/core": "^7.11.4", "@babel/plugin-proposal-class-properties": "^7.10.4", - "@babel/plugin-proposal-object-rest-spread": "^7.10.4", + "@babel/plugin-proposal-object-rest-spread": "^7.11.0", "@babel/plugin-syntax-dynamic-import": "^7.8.3", - "@babel/preset-env": "^7.10.4", + "@babel/preset-env": "^7.11.0", "@babel/preset-react": "^7.10.4", "@babel/register": "^7.10.5", "babel-eslint": "^10.1.0", @@ -34,7 +34,7 @@ "esdoc-unexported-identifier-plugin": "^1.0.0", "eslint": "^5.16.0", "eslint-plugin-cypress": "^2.11.1", - "eslint-plugin-react": "^7.20.3", + "eslint-plugin-react": "^7.20.6", "gulp": "^4.0.0", "jest-cli": "^24.9.0", "jsdom": "^13.2.0", @@ -43,20 +43,24 @@ "sinon": "^1.17.6", "source-map-support": "^0.5.19", "string-replace-loader": "^1.0.0", - "terser-webpack-plugin": "^1.4.4", + "terser-webpack-plugin": "^1.4.5", "uglifyjs-webpack-plugin": "^2.2.0", "webpack": "4.28.4", "webpack-bundle-analyzer": "^3.8.0", "webpack-deadcode-plugin": "^0.1.12" }, "dependencies": { - "auth0-lock": "^11.25.1", - "aws-sdk": "^2.714.0", + "auth0-lock": "^11.26.3", + "aws-sdk": "^2.741.0", "crypto-js": "^3.3.0", "dom-helpers": "^3.4.0", + "higlass": "1.11.2", + "higlass-multivec": "0.2.4", + "higlass-register": "^0.1.0", "html-react-parser": "^0.4.7", "js-md5": "^0.4.2", "jsonwebtoken": ">=7.4.0", + "pixi.js": "^5.3.0", "rc-progress": "^2.6.1", "react-draggable": "^3.3.2", "react-infinite": "^0.13.0", diff --git a/src/components/viz/HiGlass/HiGlassPlainContainer.js b/src/components/viz/HiGlass/HiGlassPlainContainer.js new file mode 100644 index 00000000..8c71cfa5 --- /dev/null +++ b/src/components/viz/HiGlass/HiGlassPlainContainer.js @@ -0,0 +1,216 @@ +'use strict'; + +import React from 'react'; +import PropTypes from 'prop-types'; +import _ from 'underscore'; +import { console, ajax } from './../../util'; +import { requestAnimationFrame } from './../utilities'; +import { default as installedPackageLockJson } from './../../../../package-lock.json'; + + +/** + * Functional component to display loading indicator. + * + * @param {{ icon: string, title: JSX.Element|string }} props Props passed into this Component. + */ +export function HiGlassLoadingIndicator(props) { + const { icon, title } = props; + return ( + +

+ +

+ { title || "Initializing" } + + ); +} + +/** Loaded upon componentDidMount; HiGlassComponent is not supported server-side. */ +let HiGlassComponent = null; +let StackedBarTrack = null; +let higlassRegister = null; + +export class HiGlassPlainContainer extends React.PureComponent { + + static correctTrackDimensions(hiGlassComponent){ + requestAnimationFrame(()=>{ + _.forEach(hiGlassComponent.tiledPlots, (tp) => tp && tp.measureSize()); + }); + } + + static propTypes = { + 'viewConfig' : PropTypes.object.isRequired, + 'isValidating' : PropTypes.bool, + 'height' : PropTypes.number, + 'mountDelay' : PropTypes.number.isRequired, + 'onViewConfigUpdated': PropTypes.func + }; + + static defaultProps = { + 'options' : { 'bounded' : true }, + 'isValidating' : false, + 'disabled' : false, + 'height' : 500, + 'viewConfig' : null, + 'mountDelay' : 500, + 'placeholder' : , + }; + + constructor(props){ + super(props); + this.instanceContainerRefFunction = this.instanceContainerRefFunction.bind(this); + this.correctTrackDimensions = this.correctTrackDimensions.bind(this); + this.getHiGlassComponent = this.getHiGlassComponent.bind(this); + + this.state = { + 'mounted' : false, + 'mountCount' : 0, + 'hasRuntimeError' : false + }; + + this.hgcRef = React.createRef(); + } + + componentDidMount(){ + const { mountDelay, onViewConfigUpdated } = this.props; + const finish = () => { + this.setState(function(currState){ + return { 'mounted' : true, 'mountCount' : currState.mountCount + 1 }; + }, () => { + setTimeout(this.correctTrackDimensions, 500); + if (onViewConfigUpdated && typeof onViewConfigUpdated === 'function') { + const hgc = this.getHiGlassComponent(); + if (hgc) { + hgc.api.on("viewConfig", onViewConfigUpdated); + } + } + }); + }; + + setTimeout(()=>{ // Allow tab CSS transition to finish (the render afterwards lags browser a little bit). + if (!HiGlassComponent) { + window.fetch = window.fetch || ajax.fetchPolyfill; // Browser compatibility polyfill + + // Load in HiGlass libraries as separate JS file due to large size. + // @see https://webpack.js.org/api/module-methods/#requireensure + // TODO figure out how to use import() syntax to load multiple dependencies, to keep HiGlass working. + require.ensure(['higlass/dist/hglib', 'higlass-register', 'higlass-multivec/es/StackedBarTrack'], (require) => { + HiGlassComponent = require('higlass/dist/hglib').HiGlassComponent; + higlassRegister = require('higlass-register').default; + StackedBarTrack = require('higlass-multivec/es/StackedBarTrack').default; + console.log("LOADED", HiGlassComponent); + // Possible todo: use pluginTracks prop to pass `"horizontal-stacked-bar" : StackedBarTrack` + // in render method instead. + higlassRegister({ + name: 'StackedBarTrack', + track: StackedBarTrack, + config: StackedBarTrack.config, + }); + finish(); + }, "higlass-utils-bundle"); + + } else { + finish(); + } + + }, mountDelay || 500); + + } + + correctTrackDimensions(){ + var hgc = this.getHiGlassComponent(); + if (hgc){ + HiGlassPlainContainer.correctTrackDimensions(hgc); + } else { + console.error('NO HGC'); + } + } + + componentWillUnmount(){ + this.setState({ 'mounted' : false }); + } + + componentDidCatch(){ + this.setState({ 'hasRuntimeError' : true }); + } + + /** + * Fade in div element containing HiGlassComponent after HiGlass initiates & loads in first tile etc. (about 500ms). + * For prettiness only. + */ + instanceContainerRefFunction(element){ + if (element){ + setTimeout(function(){ + requestAnimationFrame(function(){ + element.style.transition = null; // Use transition as defined in stylesheet + element.style.opacity = 1; + }); + }, 500); + } + } + + getHiGlassComponent(){ + return (this && this.hgcRef && this.hgcRef.current) || null; + } + + /** + * This returns the viewconfig currently stored in PlainContainer _state_. + * We should adjust this to instead return `JSON.parse(hgc.api.exportViewConfigAsString())`, + * most likely, to be of any use because HiGlassComponent keeps its own representation of the + * viewConfig. + * + * @todo Change to the above once needed. Don't rely on until then. + */ + getCurrentViewConfig(){ + var hgc = this.getHiGlassComponent(); + return (hgc && hgc.state.viewConfig) || null; + } + + render(){ + const { disabled, isValidating, tilesetUid, height, width, options, style, className, viewConfig, placeholder } = this.props; + const { mounted, mountCount, hasRuntimeError } = this.state; + const { dependencies : { higlass : { version: higlassVersionUsed } } } = installedPackageLockJson; + let hiGlassInstance = null; + const outerKey = "mount-number-" + mountCount; + + if (isValidating || !mounted){ + var placeholderStyle = {}; + if (typeof height === 'number' && height >= 140){ + placeholderStyle.height = height; + placeholderStyle.paddingTop = (height / 2) - 40; + } + hiGlassInstance =
{ placeholder }
; + } else if (disabled) { + hiGlassInstance = ( +
+

Not Available

+
+ ); + } else if (hasRuntimeError) { + hiGlassInstance = ( +
+

Runtime Error

+
+ ); + } else { + hiGlassInstance = ( +
+ +
+ ); + } + + /** + * TODO: Some state + UI functions to make higlass view full screen. + * Should try to make as common as possible between one for workflow tab & this. Won't be 100% compatible since adjust workflow detail tab inner elem styles, but maybe some common func for at least width, height, etc. + */ + return ( +
+ + {/*