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<h1>BigBrain Maps & Models</h1>
<p>Maps of cytoarchitectonic areas, cortical layers, and nuclei in the human cerebral cortex are a key aspect of multi-level brain atlases, and considered a gold standard for describing the cellular organization of the brain. Using modern image processing and Deep Learning methods, we generate highly detailed 3D maps for the BigBrain, which serve as a reference for localizing high-resolution multimodal measurements in a common space and build a basis to study the detailed morphology and architecture of this brain model.</p>
<a href="#citation">How to cite the BigBrain</a>
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<div class="tool-description" data-mh="description">Explore the high resolution human brain model online in the ebrains siibra explorer.</div>
<a href="https://atlases.ebrains.eu/viewer/#/a:juelich:iav:atlas:v1.0.0:1/t:minds:core:referencespace:v1.0.0:a1655b99-82f1-420f-a3c2-fe80fd4c8588/p:juelich:iav:atlas:v1.0.0:4/@:0.0.0.-W000.._eCwg.2-FUe3._-s_W.2_evlu..7LIx..gIW~.10AwC.B1KK~..1LSm" target="_blank"><button class="float-right">Open ebrains siibra explorer</button></a>
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<a href="https://ftp.bigbrainproject.org/" target="_blank"><button class="float-right">Download via FTP</button></a><br>
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<a href="https://ftp.bigbrainproject.org/bigbrain-ftp/License.txt"><button class="float-right small-spacer">download license (txt)</button></a>
<a href="https://forum.bigbrainproject.org/t/bigbrain-license/" target="_blank"><button class="float-right">view license</button></a>
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<div class="tool-name" data-mh="title">Cortical Layer Maps</div>
<div class="tool-description" data-mh="description">Explore BigBrain cortical layer segmentation online in the siibra viewer.</div>
<a href="https://atlases.ebrains.eu/viewer/#/a:juelich:iav:atlas:v1.0.0:1/t:minds:core:referencespace:v1.0.0:a1655b99-82f1-420f-a3c2-fe80fd4c8588/p:juelich:iav:atlas:v1.0.0:3/@:0.0.0.-W000.._eCwg.2-FUe3._-s_W.2_evlu..7LIy..9teY~.GW6K.b1lI..1sst" target="_blank"><button class="float-right small-spacer">Open ebrains siibra explorer</button></a>
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<div class="tool-name" data-mh="title">Cytoarchitectonic Maps</div>
<div class="tool-description" data-mh="description">Explore BigBrain cytoarchitectonic maps online in the siibra viewer.</div>
<a href="https://atlases.ebrains.eu/viewer/#/a:juelich:iav:atlas:v1.0.0:1/t:minds:core:referencespace:v1.0.0:a1655b99-82f1-420f-a3c2-fe80fd4c8588/p:minds:core:parcellationatlas:v1.0.0:94c1125b-b87e-45e4-901c-00daee7f2579-290/@:0.0.0.-W000.._eCwg.2-FUe3._-s_W.2_evlu..7LIx..gIW~.10AwC.B1KK~..1LSm" target="_blank"><button class="float-right small-spacer">Open ebrains siibra explorer</button></a>
<a href="https://search.kg.ebrains.eu/?category=Dataset&q=bigbrain" target="_blank"><button class="float-right">Download via ebrains</button></a>
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<div class="tool-name" data-mh="title">Selected 1 micron scans of BigBrain histological sections</div>
<div class="tool-description" data-mh="description">Explore microscopic features at cellular level. BigBrain sections at micron in-plane resolution, aligned to the 20µm 3D-reconstructed BigBrain.</div>
<!-- Selected 1 micron scans of BigBrain histological sections (v1.0), section 4844 (cell body staining) -->
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<div class="tool-name" data-mh="title">Julich Brain Atlas</div>
<div class="tool-description" data-mh="description">Cytoarchitectonic maps of the human brain in high resolution comprising maps of more brain areas than ever identified before.<br><br>
Explore the Julich Brain Atlas online link:</div>
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<div class="tool-name" data-mh="title">How to Cite</div>
<div class="tool-description" data-mh="description">When referring to the BigBrain Project or using the data, please cite the original Science 2013 publication:</div>
<p class="left-align">Amunts K et al. BigBrain: An ultrahigh-resolution 3D human brain model. Science. 2013; 340(6139):1472-1475. doi: 10.1126/science.1235381. PMID: 23788795.</p>
<a href="docs/how_to_cite.txt"><button class="float-right small-spacer">download full citation (txt)</button></a>
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