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Profile not compatible error #82

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m-cotic opened this issue Sep 20, 2024 · 1 comment
Open

Profile not compatible error #82

m-cotic opened this issue Sep 20, 2024 · 1 comment

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@m-cotic
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m-cotic commented Sep 20, 2024

Hello,

Whilst trying to run the first sample we've encountered an error (see below). This is ONT adaptive sampling data aligned to GRCh38.p13. Would this patch difference be the root cause of this error?

Thanks a lot
Aldy error

EDIT: After looking at the script that makes the profiles, I saw that the reference genome was automatically selected as hg19, I changed this to hg38 and it did work.

NEW ISSUE: Currently one of the main outstanding issues is not getting an output file as it cannot write to the output directory.

Thanks again

@inumanag
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inumanag commented Nov 1, 2024

Hi @m-cotic ,

Yes, you need to use --genome hg38 when doing aldy profile if you are using hg38.

What is the issue with writing the output---can you show me a log, please? Is that directory writable at all?

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